Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD3P31249 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC14.45□□□□□ -0.1
HOXD3P31249 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD3P31249 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD3P31249 IPPK-202ENST00000375522 882 ntTSL 3 BASIC14.45□□□□□ -0.1
HOXD3P31249 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD3P31249 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC14.45□□□□□ -0.1
HOXD3P31249 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
HOXD3P31249 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD3P31249 MCCD1P1-208ENST00000445732 328 ntBASIC14.45□□□□□ -0.1
HOXD3P31249 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD3P31249 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC14.45□□□□□ -0.1
HOXD3P31249 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC14.45□□□□□ -0.1
HOXD3P31249 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC14.45□□□□□ -0.1
HOXD3P31249 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC14.45□□□□□ -0.1
HOXD3P31249 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC14.45□□□□□ -0.1
HOXD3P31249 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD3P31249 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD3P31249 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
HOXD3P31249 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD3P31249 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
HOXD3P31249 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD3P31249 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC14.45□□□□□ -0.1
HOXD3P31249 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD3P31249 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC14.45□□□□□ -0.1
HOXD3P31249 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD3P31249 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
HOXD3P31249 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD3P31249 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
HOXD3P31249 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC14.45□□□□□ -0.1
HOXD3P31249 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD3P31249 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
HOXD3P31249 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD3P31249 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD3P31249 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD3P31249 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD3P31249 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD3P31249 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC14.44□□□□□ -0.1
HOXD3P31249 AC005332.1-201ENST00000577698 1310 ntBASIC14.44□□□□□ -0.1
HOXD3P31249 AL512353.2-201ENST00000448759 1962 ntBASIC14.44□□□□□ -0.1
HOXD3P31249 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD3P31249 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD3P31249 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD3P31249 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD3P31249 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD3P31249 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD3P31249 AL023284.2-201ENST00000405850 579 ntBASIC14.44□□□□□ -0.1
HOXD3P31249 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD3P31249 HCG4P8-203ENST00000443049 980 ntBASIC14.44□□□□□ -0.1
HOXD3P31249 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
HOXD3P31249 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC14.44□□□□□ -0.1
HOXD3P31249 VENTXP5-201ENST00000523979 775 ntBASIC14.44□□□□□ -0.1
HOXD3P31249 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC14.44□□□□□ -0.1
HOXD3P31249 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC14.44□□□□□ -0.1
HOXD3P31249 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC14.44□□□□□ -0.1
HOXD3P31249 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC14.44□□□□□ -0.1
HOXD3P31249 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD3P31249 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD3P31249 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD3P31249 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
HOXD3P31249 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD3P31249 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
HOXD3P31249 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
HOXD3P31249 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD3P31249 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
HOXD3P31249 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC14.44□□□□□ -0.1
HOXD3P31249 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC14.44□□□□□ -0.1
HOXD3P31249 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
HOXD3P31249 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
HOXD3P31249 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD3P31249 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD3P31249 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD3P31249 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC14.43□□□□□ -0.1
HOXD3P31249 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD3P31249 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD3P31249 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC14.43□□□□□ -0.1
HOXD3P31249 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD3P31249 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC14.43□□□□□ -0.1
HOXD3P31249 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
HOXD3P31249 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
HOXD3P31249 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD3P31249 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC14.43□□□□□ -0.1
HOXD3P31249 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD3P31249 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD3P31249 RCC2P3-201ENST00000418112 1537 ntBASIC14.43□□□□□ -0.1
HOXD3P31249 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC14.43□□□□□ -0.1
HOXD3P31249 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD3P31249 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC14.43□□□□□ -0.1
HOXD3P31249 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC14.43□□□□□ -0.1
HOXD3P31249 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD3P31249 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC14.43□□□□□ -0.1
HOXD3P31249 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC14.43□□□□□ -0.1
HOXD3P31249 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC14.43□□□□□ -0.1
HOXD3P31249 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD3P31249 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
HOXD3P31249 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC14.43□□□□□ -0.1
HOXD3P31249 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC14.43□□□□□ -0.1
HOXD3P31249 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC14.43□□□□□ -0.1
HOXD3P31249 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC14.43□□□□□ -0.1
HOXD3P31249 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms