Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PTPN4P29074 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
PTPN4P29074 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.77■□□□□ 0.6
PTPN4P29074 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
PTPN4P29074 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.77■□□□□ 0.59
PTPN4P29074 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PTPN4P29074 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
PTPN4P29074 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
PTPN4P29074 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
PTPN4P29074 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
PTPN4P29074 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN4P29074 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN4P29074 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN4P29074 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
PTPN4P29074 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN4P29074 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.76■□□□□ 0.59
PTPN4P29074 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
PTPN4P29074 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
PTPN4P29074 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.76■□□□□ 0.59
PTPN4P29074 TSPY15P-201ENST00000457163 923 ntBASIC18.76■□□□□ 0.59
PTPN4P29074 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.76■□□□□ 0.59
PTPN4P29074 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.76■□□□□ 0.59
PTPN4P29074 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.76■□□□□ 0.59
PTPN4P29074 AL355075.4-201ENST00000554988 638 ntBASIC18.76■□□□□ 0.59
PTPN4P29074 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.76■□□□□ 0.59
PTPN4P29074 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.76■□□□□ 0.59
PTPN4P29074 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN4P29074 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN4P29074 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.76■□□□□ 0.59
PTPN4P29074 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN4P29074 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN4P29074 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN4P29074 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN4P29074 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN4P29074 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PTPN4P29074 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.75■□□□□ 0.59
PTPN4P29074 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
PTPN4P29074 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
PTPN4P29074 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.75■□□□□ 0.59
PTPN4P29074 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN4P29074 KRT8P20-201ENST00000423953 1409 ntBASIC18.75■□□□□ 0.59
PTPN4P29074 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN4P29074 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN4P29074 PHGDH-210ENST00000641115 1638 ntBASIC18.75■□□□□ 0.59
PTPN4P29074 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN4P29074 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
PTPN4P29074 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
PTPN4P29074 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
PTPN4P29074 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN4P29074 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
PTPN4P29074 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN4P29074 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN4P29074 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN4P29074 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN4P29074 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
PTPN4P29074 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN4P29074 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN4P29074 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN4P29074 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN4P29074 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
PTPN4P29074 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.75■□□□□ 0.59
PTPN4P29074 AC004264.1-201ENST00000608354 794 ntBASIC18.75■□□□□ 0.59
PTPN4P29074 AC026471.5-201ENST00000615068 467 ntBASIC18.75■□□□□ 0.59
PTPN4P29074 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
PTPN4P29074 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN4P29074 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.75■□□□□ 0.59
PTPN4P29074 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.75■□□□□ 0.59
PTPN4P29074 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.75■□□□□ 0.59
PTPN4P29074 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN4P29074 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN4P29074 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
PTPN4P29074 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN4P29074 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.74■□□□□ 0.59
PTPN4P29074 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN4P29074 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.74■□□□□ 0.59
PTPN4P29074 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN4P29074 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN4P29074 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN4P29074 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
PTPN4P29074 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN4P29074 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN4P29074 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN4P29074 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN4P29074 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.74■□□□□ 0.59
PTPN4P29074 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
PTPN4P29074 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN4P29074 AC087499.1-201ENST00000418141 1075 ntBASIC18.74■□□□□ 0.59
PTPN4P29074 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.74■□□□□ 0.59
PTPN4P29074 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.74■□□□□ 0.59
PTPN4P29074 AC133561.5-201ENST00000635547 218 ntBASIC18.74■□□□□ 0.59
PTPN4P29074 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN4P29074 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN4P29074 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN4P29074 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN4P29074 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
PTPN4P29074 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.74■□□□□ 0.59
PTPN4P29074 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.74■□□□□ 0.59
PTPN4P29074 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN4P29074 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PTPN4P29074 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms