Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CDH3P22223 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH3P22223 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
CDH3P22223 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.29■□□□□ 0.52
CDH3P22223 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.29■□□□□ 0.52
CDH3P22223 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH3P22223 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH3P22223 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH3P22223 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.28■□□□□ 0.52
CDH3P22223 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.28■□□□□ 0.52
CDH3P22223 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH3P22223 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH3P22223 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH3P22223 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH3P22223 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.28■□□□□ 0.52
CDH3P22223 AC020763.4-201ENST00000623414 4170 ntBASIC18.28■□□□□ 0.52
CDH3P22223 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
CDH3P22223 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.28■□□□□ 0.52
CDH3P22223 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH3P22223 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
CDH3P22223 AP003041.3-201ENST00000527151 707 ntBASIC18.28■□□□□ 0.52
CDH3P22223 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDH3P22223 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.28■□□□□ 0.52
CDH3P22223 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
CDH3P22223 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH3P22223 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH3P22223 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDH3P22223 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CDH3P22223 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CDH3P22223 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.28■□□□□ 0.52
CDH3P22223 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC18.28■□□□□ 0.52
CDH3P22223 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.28■□□□□ 0.52
CDH3P22223 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.28■□□□□ 0.52
CDH3P22223 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH3P22223 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDH3P22223 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH3P22223 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CDH3P22223 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH3P22223 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDH3P22223 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.28■□□□□ 0.52
CDH3P22223 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH3P22223 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH3P22223 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH3P22223 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH3P22223 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH3P22223 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
CDH3P22223 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
CDH3P22223 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH3P22223 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.27■□□□□ 0.52
CDH3P22223 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH3P22223 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH3P22223 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH3P22223 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
CDH3P22223 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.52
CDH3P22223 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH3P22223 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.27■□□□□ 0.52
CDH3P22223 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.27■□□□□ 0.52
CDH3P22223 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CDH3P22223 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.27■□□□□ 0.52
CDH3P22223 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.27■□□□□ 0.52
CDH3P22223 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.27■□□□□ 0.52
CDH3P22223 AL049597.2-201ENST00000565575 961 ntBASIC18.27■□□□□ 0.52
CDH3P22223 AL512604.3-201ENST00000569583 964 ntBASIC18.27■□□□□ 0.52
CDH3P22223 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CDH3P22223 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH3P22223 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH3P22223 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.27■□□□□ 0.52
CDH3P22223 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.27■□□□□ 0.51
CDH3P22223 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.27■□□□□ 0.51
CDH3P22223 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CDH3P22223 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
CDH3P22223 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.27■□□□□ 0.51
CDH3P22223 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.27■□□□□ 0.51
CDH3P22223 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.26■□□□□ 0.51
CDH3P22223 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH3P22223 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH3P22223 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.26■□□□□ 0.51
CDH3P22223 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.26■□□□□ 0.51
CDH3P22223 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CDH3P22223 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH3P22223 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CDH3P22223 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.26■□□□□ 0.51
CDH3P22223 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CDH3P22223 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.26■□□□□ 0.51
CDH3P22223 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH3P22223 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.26■□□□□ 0.51
CDH3P22223 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.26■□□□□ 0.51
CDH3P22223 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CDH3P22223 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
CDH3P22223 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.26■□□□□ 0.51
CDH3P22223 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.26■□□□□ 0.51
CDH3P22223 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CDH3P22223 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CDH3P22223 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH3P22223 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
CDH3P22223 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.26■□□□□ 0.51
CDH3P22223 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CDH3P22223 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH3P22223 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH3P22223 HCG11-201ENST00000411553 5696 ntBASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms