Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VCANP13611 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCANP13611 VENTXP7-201ENST00000475503 772 ntBASIC19.3■□□□□ 0.68
VCANP13611 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
VCANP13611 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC19.3■□□□□ 0.68
VCANP13611 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VCANP13611 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.3■□□□□ 0.68
VCANP13611 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCANP13611 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VCANP13611 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
VCANP13611 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
VCANP13611 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.3■□□□□ 0.68
VCANP13611 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCANP13611 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VCANP13611 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCANP13611 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VCANP13611 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.3■□□□□ 0.68
VCANP13611 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC19.3■□□□□ 0.68
VCANP13611 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC19.3■□□□□ 0.68
VCANP13611 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VCANP13611 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VCANP13611 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VCANP13611 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
VCANP13611 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VCANP13611 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
VCANP13611 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VCANP13611 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC19.29■□□□□ 0.68
VCANP13611 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.29■□□□□ 0.68
VCANP13611 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VCANP13611 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VCANP13611 Z98882.1-201ENST00000622160 2253 ntBASIC19.29■□□□□ 0.68
VCANP13611 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VCANP13611 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VCANP13611 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
VCANP13611 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC19.29■□□□□ 0.68
VCANP13611 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VCANP13611 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
VCANP13611 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
VCANP13611 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VCANP13611 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.29■□□□□ 0.68
VCANP13611 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
VCANP13611 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VCANP13611 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.29■□□□□ 0.68
VCANP13611 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VCANP13611 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VCANP13611 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC19.29■□□□□ 0.68
VCANP13611 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VCANP13611 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.28■□□□□ 0.68
VCANP13611 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
VCANP13611 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VCANP13611 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC19.28■□□□□ 0.68
VCANP13611 AC005829.1-201ENST00000570002 483 ntBASIC19.28■□□□□ 0.68
VCANP13611 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
VCANP13611 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
VCANP13611 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC19.28■□□□□ 0.68
VCANP13611 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.28■□□□□ 0.68
VCANP13611 SIGLEC30P-201ENST00000455569 941 ntBASIC19.28■□□□□ 0.68
VCANP13611 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VCANP13611 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.28■□□□□ 0.68
VCANP13611 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VCANP13611 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VCANP13611 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VCANP13611 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VCANP13611 KRT8P3-201ENST00000519669 1449 ntBASIC19.28■□□□□ 0.68
VCANP13611 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VCANP13611 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VCANP13611 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VCANP13611 CCS-201ENST00000310190 942 ntTSL 5 BASIC19.27■□□□□ 0.68
VCANP13611 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC19.27■□□□□ 0.68
VCANP13611 AC092910.1-201ENST00000482027 1129 ntBASIC19.27■□□□□ 0.68
VCANP13611 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.27■□□□□ 0.68
VCANP13611 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.27■□□□□ 0.68
VCANP13611 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VCANP13611 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.27■□□□□ 0.68
VCANP13611 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC19.27■□□□□ 0.68
VCANP13611 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
VCANP13611 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VCANP13611 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.27■□□□□ 0.68
VCANP13611 ELL2P1-201ENST00000413990 1906 ntBASIC19.27■□□□□ 0.68
VCANP13611 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VCANP13611 AC112907.3-201ENST00000577781 2400 ntBASIC19.27■□□□□ 0.68
VCANP13611 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
VCANP13611 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC19.27■□□□□ 0.67
VCANP13611 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
VCANP13611 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.27■□□□□ 0.67
VCANP13611 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.27■□□□□ 0.67
VCANP13611 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
VCANP13611 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.67
VCANP13611 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC19.27■□□□□ 0.67
VCANP13611 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC19.27■□□□□ 0.67
VCANP13611 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
VCANP13611 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.27■□□□□ 0.67
VCANP13611 AJ011932.1-201ENST00000621707 465 ntBASIC19.27■□□□□ 0.67
VCANP13611 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VCANP13611 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VCANP13611 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VCANP13611 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
VCANP13611 CRCP-205ENST00000431089 942 ntTSL 2 BASIC19.26■□□□□ 0.67
VCANP13611 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VCANP13611 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms