Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.26■□□□□ 0.51
SDC3O75056 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SDC3O75056 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.25■□□□□ 0.51
SDC3O75056 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
SDC3O75056 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SDC3O75056 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SDC3O75056 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.25■□□□□ 0.51
SDC3O75056 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
SDC3O75056 UNC93B7-201ENST00000509439 705 ntBASIC18.25■□□□□ 0.51
SDC3O75056 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.25■□□□□ 0.51
SDC3O75056 AC111152.3-201ENST00000569699 673 ntBASIC18.25■□□□□ 0.51
SDC3O75056 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SDC3O75056 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
SDC3O75056 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SDC3O75056 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SDC3O75056 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SDC3O75056 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SDC3O75056 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SDC3O75056 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SDC3O75056 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SDC3O75056 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
SDC3O75056 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SDC3O75056 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SDC3O75056 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.25■□□□□ 0.51
SDC3O75056 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SDC3O75056 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.24■□□□□ 0.51
SDC3O75056 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.24■□□□□ 0.51
SDC3O75056 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC18.24■□□□□ 0.51
SDC3O75056 AL158211.5-201ENST00000623583 2518 ntBASIC18.24■□□□□ 0.51
SDC3O75056 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SDC3O75056 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
SDC3O75056 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SDC3O75056 IRX1P1-201ENST00000438849 1838 ntBASIC18.24■□□□□ 0.51
SDC3O75056 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SDC3O75056 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SDC3O75056 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SDC3O75056 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.24■□□□□ 0.51
SDC3O75056 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
SDC3O75056 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.24■□□□□ 0.51
SDC3O75056 LINC00265-3P-201ENST00000447588 903 ntBASIC18.24■□□□□ 0.51
SDC3O75056 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SDC3O75056 AP000867.3-201ENST00000524675 377 ntBASIC18.24■□□□□ 0.51
SDC3O75056 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.24■□□□□ 0.51
SDC3O75056 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SDC3O75056 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.24■□□□□ 0.51
SDC3O75056 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.23■□□□□ 0.51
SDC3O75056 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SDC3O75056 Z83836.1-201ENST00000624605 1642 ntBASIC18.23■□□□□ 0.51
SDC3O75056 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SDC3O75056 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.23■□□□□ 0.51
SDC3O75056 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.23■□□□□ 0.51
SDC3O75056 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SDC3O75056 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
SDC3O75056 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SDC3O75056 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.23■□□□□ 0.51
SDC3O75056 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.23■□□□□ 0.51
SDC3O75056 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SDC3O75056 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SDC3O75056 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SDC3O75056 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SDC3O75056 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SDC3O75056 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
SDC3O75056 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SDC3O75056 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SDC3O75056 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.23■□□□□ 0.51
SDC3O75056 AC104390.1-201ENST00000555663 520 ntBASIC18.23■□□□□ 0.51
SDC3O75056 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.23■□□□□ 0.51
SDC3O75056 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.23■□□□□ 0.51
SDC3O75056 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SDC3O75056 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
SDC3O75056 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SDC3O75056 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.23■□□□□ 0.51
SDC3O75056 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.23■□□□□ 0.51
SDC3O75056 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SDC3O75056 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SDC3O75056 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SDC3O75056 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SDC3O75056 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SDC3O75056 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SDC3O75056 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SDC3O75056 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SDC3O75056 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
SDC3O75056 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SDC3O75056 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SDC3O75056 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SDC3O75056 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SDC3O75056 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
SDC3O75056 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SDC3O75056 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SDC3O75056 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SDC3O75056 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SDC3O75056 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SDC3O75056 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.22■□□□□ 0.51
SDC3O75056 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SDC3O75056 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SDC3O75056 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SDC3O75056 AC004870.1-201ENST00000315132 882 ntBASIC18.22■□□□□ 0.51
SDC3O75056 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC18.22■□□□□ 0.51
SDC3O75056 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SDC3O75056 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms