Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 SPDYE13P-201ENST00000445314 798 ntBASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 AC009065.1-201ENST00000564055 1225 ntBASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
C1QTNF3-AMACRE9PGA6 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 AL161938.1-201ENST00000569833 2180 ntBASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 Z98044.1-201ENST00000632503 1764 ntBASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 AC005332.7-201ENST00000614046 2005 ntBASIC18.69■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.69■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC18.69■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 HLA-F-220ENST00000434407 884 ntBASIC18.69■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.69■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.69■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.69■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.69■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 AC079602.3-201ENST00000623931 403 ntBASIC18.69■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 AL391807.1-203ENST00000604392 2365 ntBASIC18.69■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.69■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.69■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.69■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.68■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.68■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.68■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 AC083906.6-201ENST00000641366 219 ntBASIC18.68■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.68■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.68■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.68■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.68■□□□□ 0.58
C1QTNF3-AMACRE9PGA6 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms