Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMIM28A0A1B0GU29 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
SMIM28A0A1B0GU29 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 AL645929.1-201ENST00000420084 975 ntBASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 NMU-205ENST00000511469 756 ntTSL 3 BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 MIR3180-4-201ENST00000582223 153 ntBASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 AL136038.4-201ENST00000603606 1261 ntBASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SMIM28A0A1B0GU29 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
SMIM28A0A1B0GU29 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMIM28A0A1B0GU29 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMIM28A0A1B0GU29 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.02■□□□□ 0.8
SMIM28A0A1B0GU29 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMIM28A0A1B0GU29 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SMIM28A0A1B0GU29 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMIM28A0A1B0GU29 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
SMIM28A0A1B0GU29 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC20.02■□□□□ 0.8
SMIM28A0A1B0GU29 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.02■□□□□ 0.8
SMIM28A0A1B0GU29 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.02■□□□□ 0.8
SMIM28A0A1B0GU29 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.02■□□□□ 0.8
SMIM28A0A1B0GU29 USF2-205ENST00000594064 1179 ntTSL 2 BASIC20.02■□□□□ 0.8
SMIM28A0A1B0GU29 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC20.02■□□□□ 0.8
SMIM28A0A1B0GU29 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
SMIM28A0A1B0GU29 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMIM28A0A1B0GU29 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMIM28A0A1B0GU29 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC20.02■□□□□ 0.8
SMIM28A0A1B0GU29 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMIM28A0A1B0GU29 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMIM28A0A1B0GU29 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMIM28A0A1B0GU29 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SMIM28A0A1B0GU29 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
SMIM28A0A1B0GU29 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.02■□□□□ 0.79
SMIM28A0A1B0GU29 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
SMIM28A0A1B0GU29 KRT8P50-201ENST00000562022 1438 ntBASIC20.02■□□□□ 0.79
SMIM28A0A1B0GU29 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SMIM28A0A1B0GU29 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
SMIM28A0A1B0GU29 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.01■□□□□ 0.79
SMIM28A0A1B0GU29 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SMIM28A0A1B0GU29 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.01■□□□□ 0.79
SMIM28A0A1B0GU29 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC20.01■□□□□ 0.79
SMIM28A0A1B0GU29 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMIM28A0A1B0GU29 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMIM28A0A1B0GU29 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMIM28A0A1B0GU29 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.01■□□□□ 0.79
SMIM28A0A1B0GU29 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.01■□□□□ 0.79
SMIM28A0A1B0GU29 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.01■□□□□ 0.79
SMIM28A0A1B0GU29 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC20.01■□□□□ 0.79
SMIM28A0A1B0GU29 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC20.01■□□□□ 0.79
SMIM28A0A1B0GU29 KRT18P41-201ENST00000518924 1277 ntBASIC20.01■□□□□ 0.79
SMIM28A0A1B0GU29 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
SMIM28A0A1B0GU29 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SMIM28A0A1B0GU29 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SMIM28A0A1B0GU29 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20■□□□□ 0.79
SMIM28A0A1B0GU29 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC20■□□□□ 0.79
SMIM28A0A1B0GU29 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20■□□□□ 0.79
SMIM28A0A1B0GU29 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
SMIM28A0A1B0GU29 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
SMIM28A0A1B0GU29 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMIM28A0A1B0GU29 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
SMIM28A0A1B0GU29 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMIM28A0A1B0GU29 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20■□□□□ 0.79
SMIM28A0A1B0GU29 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
SMIM28A0A1B0GU29 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20■□□□□ 0.79
SMIM28A0A1B0GU29 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20■□□□□ 0.79
SMIM28A0A1B0GU29 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20■□□□□ 0.79
SMIM28A0A1B0GU29 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
SMIM28A0A1B0GU29 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
SMIM28A0A1B0GU29 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC20■□□□□ 0.79
SMIM28A0A1B0GU29 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
SMIM28A0A1B0GU29 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SMIM28A0A1B0GU29 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
SMIM28A0A1B0GU29 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20■□□□□ 0.79
SMIM28A0A1B0GU29 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
SMIM28A0A1B0GU29 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
SMIM28A0A1B0GU29 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.99■□□□□ 0.79
SMIM28A0A1B0GU29 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.99■□□□□ 0.79
SMIM28A0A1B0GU29 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SMIM28A0A1B0GU29 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.99■□□□□ 0.79
SMIM28A0A1B0GU29 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms