Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 HBZP1-201ENST00000354915 429 ntBASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 SEC1P-202ENST00000473944 940 ntBASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TRAV40A0A0B4J280 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 AL032819.2-201ENST00000624543 2162 ntBASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 AL645929.1-201ENST00000420084 975 ntBASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 KRT18P23-201ENST00000435622 1283 ntBASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 ELP6-205ENST00000439305 880 ntTSL 2 BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 AC092597.1-201ENST00000487352 616 ntBASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 PTK2-216ENST00000519881 863 ntTSL 3 BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TRAV40A0A0B4J280 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC15.21■□□□□ 0.02
TRAV40A0A0B4J280 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
TRAV40A0A0B4J280 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
TRAV40A0A0B4J280 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
TRAV40A0A0B4J280 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 ADM-207ENST00000530439 1839 ntTSL 2 BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 AC093484.2-201ENST00000580996 2166 ntBASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 BET1L-202ENST00000332865 533 ntTSL 5 BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 FXN-203ENST00000396366 922 ntTSL 2 BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 HCG4P8-203ENST00000443049 980 ntBASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 KRT18P56-201ENST00000507275 550 ntBASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms