Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC25.23■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC25.23■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC25.23■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC25.22■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 AL355355.2-201ENST00000442321 338 ntBASIC25.22■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 KSR1P1-201ENST00000446298 240 ntBASIC25.22■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC25.22■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 AC073195.1-201ENST00000607241 877 ntBASIC25.22■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 AC131212.4-201ENST00000623606 975 ntBASIC25.22■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC25.22■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC25.22■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC25.22■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC25.21■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC25.21■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 CALM1-205ENST00000553542 877 ntTSL 5 BASIC25.21■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC25.21■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC25.21■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC25.21■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC25.21■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC25.2■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC25.2■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC25.2■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC25.2■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 B3GAT3P1-201ENST00000471720 806 ntBASIC25.2■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC25.2■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC25.2■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC25.2■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC25.2■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC25.2■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 KRT8P9-201ENST00000558927 1449 ntBASIC25.2■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC25.19■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC25.19■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC25.19■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 WIZP1-201ENST00000531444 2299 ntBASIC25.19■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 AL512353.2-201ENST00000448759 1962 ntBASIC25.19■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC25.19■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 AL390955.1-201ENST00000428694 934 ntBASIC25.19■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC25.19■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC25.19■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC25.19■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC25.18■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC25.18■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC25.18■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC25.18■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC25.18■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC25.18■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC25.18■■□□□ 1.62
SENP3-EIF4A1A0A087X0R7 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC25.18■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms