Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 MRPL3P1-201ENST00000400109 1033 ntBASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 AC099336.1-202ENST00000602961 463 ntBASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDHGA1Q9Y5H4 HLA-A-201ENST00000376802 1334 ntBASIC17.96■□□□□ 0.46
PCDHGA1Q9Y5H4 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
PCDHGA1Q9Y5H4 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
PCDHGA1Q9Y5H4 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.95■□□□□ 0.46
PCDHGA1Q9Y5H4 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHGA1Q9Y5H4 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.95■□□□□ 0.46
PCDHGA1Q9Y5H4 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHGA1Q9Y5H4 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHGA1Q9Y5H4 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHGA1Q9Y5H4 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.95■□□□□ 0.46
PCDHGA1Q9Y5H4 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHGA1Q9Y5H4 IGHV3-47-201ENST00000425060 335 ntBASIC17.95■□□□□ 0.46
PCDHGA1Q9Y5H4 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.95■□□□□ 0.46
PCDHGA1Q9Y5H4 VENTXP7-201ENST00000475503 772 ntBASIC17.95■□□□□ 0.46
PCDHGA1Q9Y5H4 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.95■□□□□ 0.46
PCDHGA1Q9Y5H4 GPR32P1-201ENST00000601788 811 ntBASIC17.95■□□□□ 0.46
PCDHGA1Q9Y5H4 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHGA1Q9Y5H4 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC17.95■□□□□ 0.46
PCDHGA1Q9Y5H4 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
PCDHGA1Q9Y5H4 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
PCDHGA1Q9Y5H4 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.95■□□□□ 0.46
PCDHGA1Q9Y5H4 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDHGA1Q9Y5H4 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
PCDHGA1Q9Y5H4 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 SAPCD2P3-201ENST00000455031 850 ntBASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 GUSBP12-201ENST00000513727 720 ntBASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 LINC00167-201ENST00000530583 1419 ntBASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PCDHGA1Q9Y5H4 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDHGA1Q9Y5H4 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms