Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
UBE2D4Q9Y2X8 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC13.05□□□□□ -0.32
UBE2D4Q9Y2X8 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
UBE2D4Q9Y2X8 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
UBE2D4Q9Y2X8 ESPNP-201ENST00000270691 2015 ntBASIC13.05□□□□□ -0.32
UBE2D4Q9Y2X8 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
UBE2D4Q9Y2X8 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC13.05□□□□□ -0.32
UBE2D4Q9Y2X8 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
UBE2D4Q9Y2X8 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
UBE2D4Q9Y2X8 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
UBE2D4Q9Y2X8 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 KATNBL1P6-202ENST00000562413 1466 ntBASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 MTMR9LP-203ENST00000426597 1545 ntBASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC13.04□□□□□ -0.32
UBE2D4Q9Y2X8 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 FZD10-202ENST00000539839 3282 ntBASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 NFYC-AS1-201ENST00000606277 1687 ntBASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 RHEB-204ENST00000472642 900 ntTSL 3 BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 AC097658.1-201ENST00000475555 843 ntBASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 AL121832.2-201ENST00000610979 668 ntBASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 MIR5787-201ENST00000611784 55 ntBASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 HLA-A-209ENST00000638375 975 ntBASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 AC068587.9-201ENST00000641814 219 ntBASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 AC135776.1-201ENST00000319817 2481 ntBASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC13.03□□□□□ -0.32
UBE2D4Q9Y2X8 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC13.03□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms