Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 SAPCD2P4-201ENST00000424595 1171 ntBASIC15.16■□□□□ 0.02
FOXA2Q9Y261 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 RPS2P4-201ENST00000476944 856 ntBASIC15.16■□□□□ 0.02
FOXA2Q9Y261 GLRB-205ENST00000512619 728 ntTSL 3 BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 Z99916.2-201ENST00000604037 246 ntBASIC15.16■□□□□ 0.02
FOXA2Q9Y261 CD177P1-201ENST00000606252 935 ntBASIC15.16■□□□□ 0.02
FOXA2Q9Y261 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 KRT8P41-201ENST00000533985 1514 ntBASIC15.16■□□□□ 0.02
FOXA2Q9Y261 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC15.16■□□□□ 0.02
FOXA2Q9Y261 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 MADD-208ENST00000405573 1823 ntTSL 5 BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 FAM197Y1-201ENST00000421178 764 ntBASIC15.15■□□□□ 0.02
FOXA2Q9Y261 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 AC093827.2-201ENST00000512654 315 ntBASIC15.15■□□□□ 0.02
FOXA2Q9Y261 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 AC026271.3-201ENST00000571884 352 ntBASIC15.15■□□□□ 0.02
FOXA2Q9Y261 AL031985.4-201ENST00000642138 673 ntBASIC15.15■□□□□ 0.02
FOXA2Q9Y261 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 HEIH-201ENST00000623091 1652 ntBASIC15.15■□□□□ 0.02
FOXA2Q9Y261 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
FOXA2Q9Y261 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 SNAI3-AS1-205ENST00000568633 2096 ntBASIC15.14■□□□□ 0.01
FOXA2Q9Y261 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 PPP1R14BP5-201ENST00000440334 435 ntBASIC15.14■□□□□ 0.01
FOXA2Q9Y261 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 REXO2-216ENST00000544196 452 ntTSL 3 BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 AC113410.3-201ENST00000623366 203 ntBASIC15.14■□□□□ 0.01
FOXA2Q9Y261 AC066615.1-201ENST00000640911 628 ntBASIC15.14■□□□□ 0.01
FOXA2Q9Y261 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
FOXA2Q9Y261 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms