Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VPS28Q9UK41 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS28Q9UK41 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS28Q9UK41 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS28Q9UK41 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
VPS28Q9UK41 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VPS28Q9UK41 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC19.25■□□□□ 0.67
VPS28Q9UK41 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.25■□□□□ 0.67
VPS28Q9UK41 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS28Q9UK41 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS28Q9UK41 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS28Q9UK41 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS28Q9UK41 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS28Q9UK41 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS28Q9UK41 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
VPS28Q9UK41 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS28Q9UK41 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS28Q9UK41 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS28Q9UK41 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.24■□□□□ 0.67
VPS28Q9UK41 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC19.24■□□□□ 0.67
VPS28Q9UK41 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS28Q9UK41 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS28Q9UK41 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS28Q9UK41 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.24■□□□□ 0.67
VPS28Q9UK41 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS28Q9UK41 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
VPS28Q9UK41 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
VPS28Q9UK41 AK4P3-201ENST00000418260 669 ntBASIC19.24■□□□□ 0.67
VPS28Q9UK41 AC009947.2-201ENST00000444014 672 ntBASIC19.24■□□□□ 0.67
VPS28Q9UK41 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS28Q9UK41 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.24■□□□□ 0.67
VPS28Q9UK41 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.24■□□□□ 0.67
VPS28Q9UK41 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VPS28Q9UK41 AL161938.1-201ENST00000569833 2180 ntBASIC19.24■□□□□ 0.67
VPS28Q9UK41 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS28Q9UK41 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
VPS28Q9UK41 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS28Q9UK41 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS28Q9UK41 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
VPS28Q9UK41 RCC2P3-201ENST00000418112 1537 ntBASIC19.24■□□□□ 0.67
VPS28Q9UK41 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS28Q9UK41 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.24■□□□□ 0.67
VPS28Q9UK41 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS28Q9UK41 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.24■□□□□ 0.67
VPS28Q9UK41 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS28Q9UK41 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.24■□□□□ 0.67
VPS28Q9UK41 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VPS28Q9UK41 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS28Q9UK41 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
VPS28Q9UK41 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS28Q9UK41 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS28Q9UK41 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS28Q9UK41 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS28Q9UK41 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.23■□□□□ 0.67
VPS28Q9UK41 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS28Q9UK41 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS28Q9UK41 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS28Q9UK41 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS28Q9UK41 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.23■□□□□ 0.67
VPS28Q9UK41 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS28Q9UK41 AC117947.1-201ENST00000427448 529 ntBASIC19.23■□□□□ 0.67
VPS28Q9UK41 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
VPS28Q9UK41 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
VPS28Q9UK41 DUX4L26-201ENST00000489078 1255 ntBASIC19.23■□□□□ 0.67
VPS28Q9UK41 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
VPS28Q9UK41 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS28Q9UK41 AC036111.1-201ENST00000533973 1582 ntBASIC19.23■□□□□ 0.67
VPS28Q9UK41 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
VPS28Q9UK41 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS28Q9UK41 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS28Q9UK41 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
VPS28Q9UK41 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS28Q9UK41 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS28Q9UK41 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS28Q9UK41 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS28Q9UK41 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS28Q9UK41 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS28Q9UK41 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
VPS28Q9UK41 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS28Q9UK41 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
VPS28Q9UK41 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS28Q9UK41 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.22■□□□□ 0.67
VPS28Q9UK41 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.22■□□□□ 0.67
VPS28Q9UK41 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS28Q9UK41 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.22■□□□□ 0.67
VPS28Q9UK41 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
VPS28Q9UK41 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS28Q9UK41 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.22■□□□□ 0.67
VPS28Q9UK41 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC19.22■□□□□ 0.67
VPS28Q9UK41 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS28Q9UK41 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS28Q9UK41 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS28Q9UK41 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
VPS28Q9UK41 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
VPS28Q9UK41 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS28Q9UK41 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
VPS28Q9UK41 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
VPS28Q9UK41 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
VPS28Q9UK41 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS28Q9UK41 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms