Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 AL441883.1-201ENST00000566170 1045 ntBASIC21.51■■□□□ 1.03
DDX41Q9UJV9 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
DDX41Q9UJV9 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
DDX41Q9UJV9 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
DDX41Q9UJV9 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
DDX41Q9UJV9 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
DDX41Q9UJV9 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 TSPY23P-201ENST00000440136 739 ntBASIC21.5■■□□□ 1.03
DDX41Q9UJV9 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 AL023973.1-201ENST00000624619 620 ntBASIC21.5■■□□□ 1.03
DDX41Q9UJV9 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 TBC1D3P2-202ENST00000577902 1649 ntBASIC21.5■■□□□ 1.03
DDX41Q9UJV9 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 AC093484.2-201ENST00000580996 2166 ntBASIC21.5■■□□□ 1.03
DDX41Q9UJV9 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
DDX41Q9UJV9 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
DDX41Q9UJV9 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC21.49■■□□□ 1.03
DDX41Q9UJV9 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
DDX41Q9UJV9 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
DDX41Q9UJV9 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX41Q9UJV9 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX41Q9UJV9 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX41Q9UJV9 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
DDX41Q9UJV9 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX41Q9UJV9 AC092647.4-201ENST00000457211 535 ntBASIC21.49■■□□□ 1.03
DDX41Q9UJV9 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
DDX41Q9UJV9 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC21.49■■□□□ 1.03
DDX41Q9UJV9 CLN6-204ENST00000564752 900 ntTSL 3 BASIC21.49■■□□□ 1.03
DDX41Q9UJV9 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX41Q9UJV9 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX41Q9UJV9 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
DDX41Q9UJV9 AC140113.3-201ENST00000605663 199 ntBASIC21.49■■□□□ 1.03
DDX41Q9UJV9 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX41Q9UJV9 AL138781.2-201ENST00000617896 1843 ntBASIC21.49■■□□□ 1.03
DDX41Q9UJV9 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX41Q9UJV9 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
DDX41Q9UJV9 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
DDX41Q9UJV9 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX41Q9UJV9 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
DDX41Q9UJV9 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
DDX41Q9UJV9 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
DDX41Q9UJV9 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
DDX41Q9UJV9 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
DDX41Q9UJV9 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
DDX41Q9UJV9 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC21.48■■□□□ 1.03
DDX41Q9UJV9 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC21.48■■□□□ 1.03
DDX41Q9UJV9 NT5C-210ENST00000582160 860 ntTSL 2 BASIC21.48■■□□□ 1.03
DDX41Q9UJV9 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC21.48■■□□□ 1.03
DDX41Q9UJV9 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
DDX41Q9UJV9 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC21.48■■□□□ 1.03
DDX41Q9UJV9 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
DDX41Q9UJV9 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
DDX41Q9UJV9 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
DDX41Q9UJV9 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
DDX41Q9UJV9 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 Telomerase-vert.1-201ENST00000363312 438 ntBASIC21.47■■□□□ 1.03
DDX41Q9UJV9 BUB3-202ENST00000368859 667 ntTSL 3 BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 TSPY21P-201ENST00000433481 731 ntBASIC21.47■■□□□ 1.03
DDX41Q9UJV9 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 MIR4674-201ENST00000582457 87 ntBASIC21.47■■□□□ 1.03
DDX41Q9UJV9 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 AL358472.4-201ENST00000633140 710 ntBASIC21.47■■□□□ 1.03
DDX41Q9UJV9 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
DDX41Q9UJV9 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms