Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MIR1224-201ENST00000408193 85 ntBASIC18.85■□□□□ 0.61
LHX3Q9UBR4 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.85■□□□□ 0.61
LHX3Q9UBR4 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 KRT18P38-201ENST00000449496 1282 ntBASIC18.85■□□□□ 0.61
LHX3Q9UBR4 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 AC010331.1-201ENST00000611423 582 ntBASIC18.85■□□□□ 0.61
LHX3Q9UBR4 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 ANO7L1-203ENST00000602586 1720 ntBASIC18.85■□□□□ 0.61
LHX3Q9UBR4 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
LHX3Q9UBR4 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 KRT8P50-201ENST00000562022 1438 ntBASIC18.84■□□□□ 0.61
LHX3Q9UBR4 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 FAM8A6P-201ENST00000407496 1135 ntBASIC18.84■□□□□ 0.61
LHX3Q9UBR4 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 AC104390.1-201ENST00000555663 520 ntBASIC18.84■□□□□ 0.61
LHX3Q9UBR4 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LHX3Q9UBR4 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
LHX3Q9UBR4 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
LHX3Q9UBR4 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
LHX3Q9UBR4 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LHX3Q9UBR4 SPDYE15P-201ENST00000424157 909 ntBASIC18.83■□□□□ 0.6
LHX3Q9UBR4 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.83■□□□□ 0.6
LHX3Q9UBR4 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
LHX3Q9UBR4 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.83■□□□□ 0.6
LHX3Q9UBR4 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.83■□□□□ 0.6
LHX3Q9UBR4 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LHX3Q9UBR4 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LHX3Q9UBR4 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.83■□□□□ 0.6
LHX3Q9UBR4 AL499627.1-201ENST00000569373 2188 ntBASIC18.83■□□□□ 0.6
LHX3Q9UBR4 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC18.83■□□□□ 0.6
LHX3Q9UBR4 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LHX3Q9UBR4 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.83■□□□□ 0.6
LHX3Q9UBR4 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.83■□□□□ 0.6
LHX3Q9UBR4 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LHX3Q9UBR4 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
LHX3Q9UBR4 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
LHX3Q9UBR4 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LHX3Q9UBR4 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LHX3Q9UBR4 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LHX3Q9UBR4 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.82■□□□□ 0.6
LHX3Q9UBR4 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LHX3Q9UBR4 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.82■□□□□ 0.6
LHX3Q9UBR4 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LHX3Q9UBR4 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.82■□□□□ 0.6
LHX3Q9UBR4 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.82■□□□□ 0.6
LHX3Q9UBR4 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.82■□□□□ 0.6
LHX3Q9UBR4 AL359075.1-203ENST00000462729 1002 ntBASIC18.82■□□□□ 0.6
LHX3Q9UBR4 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LHX3Q9UBR4 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.82■□□□□ 0.6
LHX3Q9UBR4 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.82■□□□□ 0.6
LHX3Q9UBR4 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.82■□□□□ 0.6
LHX3Q9UBR4 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.82■□□□□ 0.6
LHX3Q9UBR4 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
LHX3Q9UBR4 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.82■□□□□ 0.6
LHX3Q9UBR4 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.82■□□□□ 0.6
LHX3Q9UBR4 TNXA-203ENST00000507684 2038 ntBASIC18.82■□□□□ 0.6
LHX3Q9UBR4 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.82■□□□□ 0.6
LHX3Q9UBR4 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
LHX3Q9UBR4 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.82■□□□□ 0.6
LHX3Q9UBR4 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LHX3Q9UBR4 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LHX3Q9UBR4 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms