Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CPNE4Q96A23 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CPNE4Q96A23 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC16.8■□□□□ 0.28
CPNE4Q96A23 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CPNE4Q96A23 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CPNE4Q96A23 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CPNE4Q96A23 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC16.79■□□□□ 0.28
CPNE4Q96A23 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CPNE4Q96A23 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
CPNE4Q96A23 AC120498.9-201ENST00000339021 3867 ntBASIC16.79■□□□□ 0.28
CPNE4Q96A23 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CPNE4Q96A23 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
CPNE4Q96A23 AL049812.1-201ENST00000432563 2267 ntBASIC16.79■□□□□ 0.28
CPNE4Q96A23 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC16.79■□□□□ 0.28
CPNE4Q96A23 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CPNE4Q96A23 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CPNE4Q96A23 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.79■□□□□ 0.28
CPNE4Q96A23 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CPNE4Q96A23 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.79■□□□□ 0.28
CPNE4Q96A23 NEK4P2-201ENST00000580004 1012 ntBASIC16.79■□□□□ 0.28
CPNE4Q96A23 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC16.79■□□□□ 0.28
CPNE4Q96A23 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.79■□□□□ 0.28
CPNE4Q96A23 AL138966.2-201ENST00000621997 464 ntBASIC16.79■□□□□ 0.28
CPNE4Q96A23 CR769767.2-201ENST00000622735 460 ntBASIC16.79■□□□□ 0.28
CPNE4Q96A23 AC141257.4-201ENST00000634557 245 ntBASIC16.79■□□□□ 0.28
CPNE4Q96A23 AC136944.6-201ENST00000634818 245 ntBASIC16.79■□□□□ 0.28
CPNE4Q96A23 AC083906.6-201ENST00000641366 219 ntBASIC16.79■□□□□ 0.28
CPNE4Q96A23 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CPNE4Q96A23 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CPNE4Q96A23 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CPNE4Q96A23 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CPNE4Q96A23 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
CPNE4Q96A23 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CPNE4Q96A23 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CPNE4Q96A23 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CPNE4Q96A23 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC16.79■□□□□ 0.28
CPNE4Q96A23 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPNE4Q96A23 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
CPNE4Q96A23 USP39-202ENST00000409025 1946 ntTSL 5 BASIC16.78■□□□□ 0.28
CPNE4Q96A23 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPNE4Q96A23 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CPNE4Q96A23 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPNE4Q96A23 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPNE4Q96A23 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CPNE4Q96A23 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPNE4Q96A23 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC16.78■□□□□ 0.28
CPNE4Q96A23 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPNE4Q96A23 TMPOP1-202ENST00000424642 1267 ntBASIC16.78■□□□□ 0.28
CPNE4Q96A23 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.78■□□□□ 0.28
CPNE4Q96A23 BX664615.1-201ENST00000443558 458 ntBASIC16.78■□□□□ 0.28
CPNE4Q96A23 KRT18P57-201ENST00000443599 1254 ntBASIC16.78■□□□□ 0.28
CPNE4Q96A23 KRT18P21-201ENST00000515767 1272 ntBASIC16.78■□□□□ 0.28
CPNE4Q96A23 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPNE4Q96A23 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPNE4Q96A23 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
CPNE4Q96A23 AC068587.9-201ENST00000641814 219 ntBASIC16.78■□□□□ 0.28
CPNE4Q96A23 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPNE4Q96A23 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPNE4Q96A23 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CPNE4Q96A23 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC16.78■□□□□ 0.28
CPNE4Q96A23 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC16.78■□□□□ 0.28
CPNE4Q96A23 HEIH-201ENST00000623091 1652 ntBASIC16.78■□□□□ 0.28
CPNE4Q96A23 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CPNE4Q96A23 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC16.78■□□□□ 0.28
CPNE4Q96A23 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CPNE4Q96A23 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CPNE4Q96A23 AC036111.1-201ENST00000533973 1582 ntBASIC16.77■□□□□ 0.28
CPNE4Q96A23 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPNE4Q96A23 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPNE4Q96A23 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPNE4Q96A23 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
CPNE4Q96A23 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.77■□□□□ 0.28
CPNE4Q96A23 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CPNE4Q96A23 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPNE4Q96A23 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC16.77■□□□□ 0.28
CPNE4Q96A23 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPNE4Q96A23 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPNE4Q96A23 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPNE4Q96A23 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPNE4Q96A23 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPNE4Q96A23 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPNE4Q96A23 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPNE4Q96A23 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC16.77■□□□□ 0.28
CPNE4Q96A23 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.77■□□□□ 0.28
CPNE4Q96A23 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC16.77■□□□□ 0.28
CPNE4Q96A23 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC16.77■□□□□ 0.28
CPNE4Q96A23 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC16.77■□□□□ 0.28
CPNE4Q96A23 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC16.77■□□□□ 0.28
CPNE4Q96A23 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC16.77■□□□□ 0.28
CPNE4Q96A23 RN7SL850P-201ENST00000579959 291 ntBASIC16.77■□□□□ 0.28
CPNE4Q96A23 AL031432.5-201ENST00000641059 760 ntBASIC16.77■□□□□ 0.28
CPNE4Q96A23 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CPNE4Q96A23 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPNE4Q96A23 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CPNE4Q96A23 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC16.77■□□□□ 0.27
CPNE4Q96A23 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CPNE4Q96A23 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
CPNE4Q96A23 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CPNE4Q96A23 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CPNE4Q96A23 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms