Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 TSPY26P-202ENST00000565928 3884 ntBASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 TSPY9P-201ENST00000440215 945 ntBASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 TSPY11P-201ENST00000442607 1045 ntBASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
CLRN3Q8NCR9 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 PP12613-201ENST00000424958 2230 ntBASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 FXN-202ENST00000396364 980 ntTSL 5 BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 GUSBP5-201ENST00000418136 578 ntBASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLRN3Q8NCR9 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 FRMD6-AS1-201ENST00000617151 2229 ntBASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 TFPT-201ENST00000391757 774 ntTSL 5 BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 KRT16P3-201ENST00000439127 1283 ntBASIC14.93□□□□□ -0.02
CLRN3Q8NCR9 CREM-229ENST00000474362 1030 ntTSL 2 BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms