Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 HTR7P1-202ENST00000624664 4411 ntBASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CLIP4Q8N3C7 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 Z85996.1-201ENST00000494644 937 ntBASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CLIP4Q8N3C7 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
CLIP4Q8N3C7 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLIP4Q8N3C7 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLIP4Q8N3C7 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.52■□□□□ 0.4
CLIP4Q8N3C7 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.52■□□□□ 0.4
CLIP4Q8N3C7 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLIP4Q8N3C7 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLIP4Q8N3C7 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.52■□□□□ 0.4
CLIP4Q8N3C7 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLIP4Q8N3C7 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.52■□□□□ 0.4
CLIP4Q8N3C7 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC17.52■□□□□ 0.4
CLIP4Q8N3C7 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC17.52■□□□□ 0.4
CLIP4Q8N3C7 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.52■□□□□ 0.4
CLIP4Q8N3C7 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.52■□□□□ 0.4
CLIP4Q8N3C7 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.52■□□□□ 0.4
CLIP4Q8N3C7 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
CLIP4Q8N3C7 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CLIP4Q8N3C7 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
CLIP4Q8N3C7 Z98044.1-201ENST00000632503 1764 ntBASIC17.52■□□□□ 0.4
CLIP4Q8N3C7 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.52■□□□□ 0.4
CLIP4Q8N3C7 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
CLIP4Q8N3C7 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CLIP4Q8N3C7 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CLIP4Q8N3C7 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CLIP4Q8N3C7 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.52■□□□□ 0.39
CLIP4Q8N3C7 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
CLIP4Q8N3C7 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.52■□□□□ 0.39
CLIP4Q8N3C7 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 AC135050.7-201ENST00000624508 2218 ntBASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 POU5F1P3-201ENST00000428824 1078 ntBASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CLIP4Q8N3C7 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms