Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
VPS13CQ709C8 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS13CQ709C8 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS13CQ709C8 EMD-201ENST00000369835 966 ntTSL 3 BASIC15.58■□□□□ 0.08
VPS13CQ709C8 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC15.58■□□□□ 0.08
VPS13CQ709C8 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS13CQ709C8 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
VPS13CQ709C8 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS13CQ709C8 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VPS13CQ709C8 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS13CQ709C8 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS13CQ709C8 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC15.58■□□□□ 0.08
VPS13CQ709C8 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC15.58■□□□□ 0.08
VPS13CQ709C8 AP001005.1-201ENST00000571755 1248 ntBASIC15.58■□□□□ 0.08
VPS13CQ709C8 AL136038.4-201ENST00000603606 1261 ntBASIC15.58■□□□□ 0.08
VPS13CQ709C8 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC15.58■□□□□ 0.08
VPS13CQ709C8 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS13CQ709C8 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
VPS13CQ709C8 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
VPS13CQ709C8 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC15.57■□□□□ 0.08
VPS13CQ709C8 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13CQ709C8 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13CQ709C8 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13CQ709C8 BNIP3P18-201ENST00000593976 575 ntBASIC15.57■□□□□ 0.08
VPS13CQ709C8 AL390719.2-201ENST00000606993 987 ntBASIC15.57■□□□□ 0.08
VPS13CQ709C8 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13CQ709C8 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13CQ709C8 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13CQ709C8 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC15.57■□□□□ 0.08
VPS13CQ709C8 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13CQ709C8 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13CQ709C8 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13CQ709C8 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13CQ709C8 FABP5-202ENST00000396359 986 ntTSL 5 BASIC15.57■□□□□ 0.08
VPS13CQ709C8 AL035633.1-201ENST00000406139 838 ntBASIC15.57■□□□□ 0.08
VPS13CQ709C8 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13CQ709C8 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13CQ709C8 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
VPS13CQ709C8 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13CQ709C8 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13CQ709C8 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13CQ709C8 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13CQ709C8 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13CQ709C8 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13CQ709C8 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC15.57■□□□□ 0.08
VPS13CQ709C8 AP001160.2-201ENST00000596071 487 ntBASIC15.57■□□□□ 0.08
VPS13CQ709C8 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
VPS13CQ709C8 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13CQ709C8 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13CQ709C8 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC15.57■□□□□ 0.08
VPS13CQ709C8 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13CQ709C8 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
VPS13CQ709C8 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC15.57■□□□□ 0.08
VPS13CQ709C8 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.57■□□□□ 0.08
VPS13CQ709C8 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC15.57■□□□□ 0.08
VPS13CQ709C8 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC15.57■□□□□ 0.08
VPS13CQ709C8 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC15.57■□□□□ 0.08
VPS13CQ709C8 TP73-202ENST00000354437 2140 ntTSL 5 BASIC15.57■□□□□ 0.08
VPS13CQ709C8 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC15.57■□□□□ 0.08
VPS13CQ709C8 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC15.57■□□□□ 0.08
VPS13CQ709C8 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
VPS13CQ709C8 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13CQ709C8 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC15.56■□□□□ 0.08
VPS13CQ709C8 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13CQ709C8 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.56■□□□□ 0.08
VPS13CQ709C8 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC15.56■□□□□ 0.08
VPS13CQ709C8 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13CQ709C8 CD63-204ENST00000546939 779 ntTSL 3 BASIC15.56■□□□□ 0.08
VPS13CQ709C8 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC15.56■□□□□ 0.08
VPS13CQ709C8 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC15.56■□□□□ 0.08
VPS13CQ709C8 AC099336.1-202ENST00000602961 463 ntBASIC15.56■□□□□ 0.08
VPS13CQ709C8 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
VPS13CQ709C8 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13CQ709C8 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
VPS13CQ709C8 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13CQ709C8 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13CQ709C8 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
VPS13CQ709C8 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
VPS13CQ709C8 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC15.56■□□□□ 0.08
VPS13CQ709C8 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13CQ709C8 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13CQ709C8 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13CQ709C8 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13CQ709C8 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13CQ709C8 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
VPS13CQ709C8 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC15.56■□□□□ 0.08
VPS13CQ709C8 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC15.56■□□□□ 0.08
VPS13CQ709C8 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC15.56■□□□□ 0.08
VPS13CQ709C8 AC010240.3-201ENST00000607688 395 ntBASIC15.56■□□□□ 0.08
VPS13CQ709C8 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC15.56■□□□□ 0.08
VPS13CQ709C8 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13CQ709C8 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13CQ709C8 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC15.56■□□□□ 0.08
VPS13CQ709C8 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13CQ709C8 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13CQ709C8 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
VPS13CQ709C8 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC15.56■□□□□ 0.08
VPS13CQ709C8 AL592071.1-201ENST00000611956 408 ntBASIC15.56■□□□□ 0.08
VPS13CQ709C8 TEX21P-204ENST00000641479 1693 ntBASIC15.56■□□□□ 0.08
VPS13CQ709C8 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms