Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC067852.2-201ENST00000590513 2313 ntBASIC18.15■□□□□ 0.5
FOXA1P55317 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA1P55317 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA1P55317 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
FOXA1P55317 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
FOXA1P55317 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
FOXA1P55317 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
FOXA1P55317 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
FOXA1P55317 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
FOXA1P55317 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.14■□□□□ 0.49
FOXA1P55317 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
FOXA1P55317 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.14■□□□□ 0.49
FOXA1P55317 AC004951.3-201ENST00000418645 1148 ntBASIC18.14■□□□□ 0.49
FOXA1P55317 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.14■□□□□ 0.49
FOXA1P55317 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC18.14■□□□□ 0.49
FOXA1P55317 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
FOXA1P55317 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.14■□□□□ 0.49
FOXA1P55317 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.14■□□□□ 0.49
FOXA1P55317 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.14■□□□□ 0.49
FOXA1P55317 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
FOXA1P55317 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
FOXA1P55317 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
FOXA1P55317 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
FOXA1P55317 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.14■□□□□ 0.49
FOXA1P55317 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
FOXA1P55317 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
FOXA1P55317 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
FOXA1P55317 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
FOXA1P55317 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
FOXA1P55317 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
FOXA1P55317 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
FOXA1P55317 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.13■□□□□ 0.49
FOXA1P55317 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
FOXA1P55317 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.13■□□□□ 0.49
FOXA1P55317 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.13■□□□□ 0.49
FOXA1P55317 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.13■□□□□ 0.49
FOXA1P55317 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
FOXA1P55317 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.13■□□□□ 0.49
FOXA1P55317 AC011298.2-201ENST00000617989 482 ntBASIC18.13■□□□□ 0.49
FOXA1P55317 CR392000.1-201ENST00000624770 1228 ntBASIC18.13■□□□□ 0.49
FOXA1P55317 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
FOXA1P55317 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.13■□□□□ 0.49
FOXA1P55317 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
FOXA1P55317 AC135776.1-201ENST00000319817 2481 ntBASIC18.13■□□□□ 0.49
FOXA1P55317 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
FOXA1P55317 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
FOXA1P55317 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
FOXA1P55317 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
FOXA1P55317 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
FOXA1P55317 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
FOXA1P55317 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
FOXA1P55317 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.13■□□□□ 0.49
FOXA1P55317 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
FOXA1P55317 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
FOXA1P55317 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.13■□□□□ 0.49
FOXA1P55317 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.13■□□□□ 0.49
FOXA1P55317 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.13■□□□□ 0.49
FOXA1P55317 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA1P55317 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA1P55317 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA1P55317 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA1P55317 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
FOXA1P55317 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA1P55317 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.12■□□□□ 0.49
FOXA1P55317 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA1P55317 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA1P55317 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
FOXA1P55317 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.12■□□□□ 0.49
FOXA1P55317 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA1P55317 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.12■□□□□ 0.49
FOXA1P55317 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.12■□□□□ 0.49
FOXA1P55317 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.12■□□□□ 0.49
FOXA1P55317 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.12■□□□□ 0.49
FOXA1P55317 KRT16P1-201ENST00000399124 1418 ntBASIC18.12■□□□□ 0.49
FOXA1P55317 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.12■□□□□ 0.49
FOXA1P55317 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
FOXA1P55317 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA1P55317 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA1P55317 RCC2P3-201ENST00000418112 1537 ntBASIC18.12■□□□□ 0.49
FOXA1P55317 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA1P55317 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA1P55317 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.12■□□□□ 0.49
FOXA1P55317 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA1P55317 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.12■□□□□ 0.49
FOXA1P55317 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
FOXA1P55317 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.12■□□□□ 0.49
FOXA1P55317 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA1P55317 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.12■□□□□ 0.49
FOXA1P55317 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
FOXA1P55317 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
FOXA1P55317 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
FOXA1P55317 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
FOXA1P55317 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
FOXA1P55317 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
FOXA1P55317 AC011506.1-201ENST00000474329 610 ntBASIC18.11■□□□□ 0.49
FOXA1P55317 RPPH1-201ENST00000516869 333 ntBASIC18.11■□□□□ 0.49
FOXA1P55317 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
FOXA1P55317 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.11■□□□□ 0.49
FOXA1P55317 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
FOXA1P55317 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms