Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COPAP53621 LETM1P2-201ENST00000597330 2178 ntBASIC19.29■□□□□ 0.68
COPAP53621 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COPAP53621 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
COPAP53621 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COPAP53621 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
COPAP53621 KRT8P45-201ENST00000414328 1447 ntBASIC19.29■□□□□ 0.68
COPAP53621 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
COPAP53621 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.29■□□□□ 0.68
COPAP53621 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COPAP53621 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COPAP53621 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC19.29■□□□□ 0.68
COPAP53621 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
COPAP53621 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC19.29■□□□□ 0.68
COPAP53621 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COPAP53621 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC19.29■□□□□ 0.68
COPAP53621 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
COPAP53621 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
COPAP53621 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COPAP53621 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.29■□□□□ 0.68
COPAP53621 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.29■□□□□ 0.68
COPAP53621 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COPAP53621 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
COPAP53621 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.29■□□□□ 0.68
COPAP53621 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COPAP53621 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COPAP53621 MED25-212ENST00000618715 1467 ntTSL 5 BASIC19.28■□□□□ 0.68
COPAP53621 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COPAP53621 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COPAP53621 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COPAP53621 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.28■□□□□ 0.68
COPAP53621 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
COPAP53621 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
COPAP53621 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.28■□□□□ 0.68
COPAP53621 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COPAP53621 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COPAP53621 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COPAP53621 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COPAP53621 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.28■□□□□ 0.68
COPAP53621 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COPAP53621 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.28■□□□□ 0.68
COPAP53621 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.28■□□□□ 0.68
COPAP53621 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.28■□□□□ 0.68
COPAP53621 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
COPAP53621 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.28■□□□□ 0.68
COPAP53621 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COPAP53621 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COPAP53621 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
COPAP53621 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COPAP53621 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COPAP53621 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
COPAP53621 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COPAP53621 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COPAP53621 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COPAP53621 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
COPAP53621 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.28■□□□□ 0.68
COPAP53621 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
COPAP53621 AL032819.2-201ENST00000624543 2162 ntBASIC19.27■□□□□ 0.68
COPAP53621 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COPAP53621 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COPAP53621 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.27■□□□□ 0.68
COPAP53621 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COPAP53621 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COPAP53621 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
COPAP53621 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.27■□□□□ 0.68
COPAP53621 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COPAP53621 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COPAP53621 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COPAP53621 AC092647.4-201ENST00000457211 535 ntBASIC19.27■□□□□ 0.68
COPAP53621 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.27■□□□□ 0.68
COPAP53621 CLN6-204ENST00000564752 900 ntTSL 3 BASIC19.27■□□□□ 0.68
COPAP53621 AL441883.1-201ENST00000566170 1045 ntBASIC19.27■□□□□ 0.68
COPAP53621 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.27■□□□□ 0.68
COPAP53621 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.27■□□□□ 0.68
COPAP53621 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
COPAP53621 AL023973.1-201ENST00000624619 620 ntBASIC19.27■□□□□ 0.68
COPAP53621 AL358472.4-201ENST00000633140 710 ntBASIC19.27■□□□□ 0.68
COPAP53621 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC19.27■□□□□ 0.68
COPAP53621 AL031432.5-201ENST00000641059 760 ntBASIC19.27■□□□□ 0.68
COPAP53621 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.27■□□□□ 0.68
COPAP53621 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COPAP53621 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COPAP53621 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COPAP53621 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COPAP53621 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
COPAP53621 AC020763.4-201ENST00000623414 4170 ntBASIC19.26■□□□□ 0.67
COPAP53621 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COPAP53621 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.26■□□□□ 0.67
COPAP53621 ZNF815P-204ENST00000434898 1737 ntBASIC19.26■□□□□ 0.67
COPAP53621 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.26■□□□□ 0.67
COPAP53621 AL138781.2-201ENST00000617896 1843 ntBASIC19.26■□□□□ 0.67
COPAP53621 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
COPAP53621 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COPAP53621 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.26■□□□□ 0.67
COPAP53621 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COPAP53621 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC19.26■□□□□ 0.67
COPAP53621 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COPAP53621 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COPAP53621 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COPAP53621 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms