Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
CXCL1P09341 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL1P09341 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL1P09341 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL1P09341 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
CXCL1P09341 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL1P09341 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CXCL1P09341 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.54□□□□□ -0.08
CXCL1P09341 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
CXCL1P09341 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC14.54□□□□□ -0.08
CXCL1P09341 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
CXCL1P09341 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC14.54□□□□□ -0.08
CXCL1P09341 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
CXCL1P09341 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL1P09341 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
CXCL1P09341 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL1P09341 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL1P09341 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
CXCL1P09341 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL1P09341 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL1P09341 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC14.53□□□□□ -0.08
CXCL1P09341 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL1P09341 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC14.53□□□□□ -0.08
CXCL1P09341 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC14.53□□□□□ -0.08
CXCL1P09341 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
CXCL1P09341 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL1P09341 AK1-201ENST00000223836 736 ntTSL 3 BASIC14.53□□□□□ -0.08
CXCL1P09341 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
CXCL1P09341 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL1P09341 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
CXCL1P09341 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC14.53□□□□□ -0.08
CXCL1P09341 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL1P09341 TFG-210ENST00000620299 1289 ntTSL 5 BASIC14.53□□□□□ -0.08
CXCL1P09341 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
CXCL1P09341 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL1P09341 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC14.53□□□□□ -0.08
CXCL1P09341 PCDHB19P-201ENST00000570871 2371 ntBASIC14.53□□□□□ -0.08
CXCL1P09341 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
CXCL1P09341 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
CXCL1P09341 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL1P09341 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL1P09341 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
CXCL1P09341 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CXCL1P09341 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CXCL1P09341 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CXCL1P09341 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC14.52□□□□□ -0.08
CXCL1P09341 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CXCL1P09341 AC103702.1-201ENST00000548801 2630 ntBASIC14.52□□□□□ -0.08
CXCL1P09341 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
CXCL1P09341 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CXCL1P09341 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CXCL1P09341 FLJ38576-201ENST00000623820 2459 ntBASIC14.52□□□□□ -0.08
CXCL1P09341 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC14.52□□□□□ -0.08
CXCL1P09341 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CXCL1P09341 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CXCL1P09341 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CXCL1P09341 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CXCL1P09341 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
CXCL1P09341 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL1P09341 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL1P09341 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL1P09341 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC14.52□□□□□ -0.09
CXCL1P09341 TERF1P2-201ENST00000583350 1212 ntBASIC14.52□□□□□ -0.09
CXCL1P09341 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL1P09341 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL1P09341 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
CXCL1P09341 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL1P09341 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL1P09341 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL1P09341 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL1P09341 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
CXCL1P09341 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC14.52□□□□□ -0.09
CXCL1P09341 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC14.52□□□□□ -0.09
CXCL1P09341 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL1P09341 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL1P09341 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CXCL1P09341 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL1P09341 OR6D1P-202ENST00000641007 5290 ntBASIC14.51□□□□□ -0.09
CXCL1P09341 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC14.51□□□□□ -0.09
CXCL1P09341 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL1P09341 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL1P09341 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL1P09341 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL1P09341 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL1P09341 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL1P09341 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL1P09341 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC14.51□□□□□ -0.09
CXCL1P09341 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL1P09341 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC14.51□□□□□ -0.09
CXCL1P09341 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL1P09341 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL1P09341 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
CXCL1P09341 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC14.51□□□□□ -0.09
CXCL1P09341 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC14.51□□□□□ -0.09
CXCL1P09341 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL1P09341 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
CXCL1P09341 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL1P09341 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL1P09341 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
CXCL1P09341 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms