Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.78■□□□□ 0.44
PROM1O43490 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PROM1O43490 Z98044.1-201ENST00000632503 1764 ntBASIC17.78■□□□□ 0.44
PROM1O43490 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.78■□□□□ 0.44
PROM1O43490 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PROM1O43490 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.78■□□□□ 0.44
PROM1O43490 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.78■□□□□ 0.44
PROM1O43490 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PROM1O43490 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PROM1O43490 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
PROM1O43490 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
PROM1O43490 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.77■□□□□ 0.44
PROM1O43490 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PROM1O43490 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PROM1O43490 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
PROM1O43490 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PROM1O43490 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.77■□□□□ 0.44
PROM1O43490 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.77■□□□□ 0.44
PROM1O43490 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PROM1O43490 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.77■□□□□ 0.44
PROM1O43490 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.77■□□□□ 0.44
PROM1O43490 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.77■□□□□ 0.44
PROM1O43490 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.77■□□□□ 0.44
PROM1O43490 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.77■□□□□ 0.44
PROM1O43490 LINC01023-201ENST00000606054 436 ntBASIC17.77■□□□□ 0.44
PROM1O43490 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.77■□□□□ 0.44
PROM1O43490 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.77■□□□□ 0.44
PROM1O43490 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PROM1O43490 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PROM1O43490 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.77■□□□□ 0.43
PROM1O43490 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
PROM1O43490 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
PROM1O43490 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.76■□□□□ 0.43
PROM1O43490 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.76■□□□□ 0.43
PROM1O43490 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PROM1O43490 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PROM1O43490 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PROM1O43490 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PROM1O43490 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PROM1O43490 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.76■□□□□ 0.43
PROM1O43490 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PROM1O43490 MMP23A-201ENST00000234610 1017 ntBASIC17.76■□□□□ 0.43
PROM1O43490 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PROM1O43490 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PROM1O43490 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.76■□□□□ 0.43
PROM1O43490 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.76■□□□□ 0.43
PROM1O43490 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PROM1O43490 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
PROM1O43490 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.76■□□□□ 0.43
PROM1O43490 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.76■□□□□ 0.43
PROM1O43490 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.76■□□□□ 0.43
PROM1O43490 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PROM1O43490 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.76■□□□□ 0.43
PROM1O43490 RCC2P3-201ENST00000418112 1537 ntBASIC17.76■□□□□ 0.43
PROM1O43490 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PROM1O43490 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.76■□□□□ 0.43
PROM1O43490 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PROM1O43490 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PROM1O43490 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PROM1O43490 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.75■□□□□ 0.43
PROM1O43490 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
PROM1O43490 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.75■□□□□ 0.43
PROM1O43490 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PROM1O43490 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PROM1O43490 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.75■□□□□ 0.43
PROM1O43490 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PROM1O43490 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.75■□□□□ 0.43
PROM1O43490 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.75■□□□□ 0.43
PROM1O43490 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PROM1O43490 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.75■□□□□ 0.43
PROM1O43490 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PROM1O43490 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.75■□□□□ 0.43
PROM1O43490 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
PROM1O43490 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
PROM1O43490 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.75■□□□□ 0.43
PROM1O43490 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.75■□□□□ 0.43
PROM1O43490 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.75■□□□□ 0.43
PROM1O43490 TSPY17P-201ENST00000450329 467 ntBASIC17.75■□□□□ 0.43
PROM1O43490 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.75■□□□□ 0.43
PROM1O43490 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PROM1O43490 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.75■□□□□ 0.43
PROM1O43490 AL353719.1-201ENST00000566847 864 ntBASIC17.75■□□□□ 0.43
PROM1O43490 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PROM1O43490 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PROM1O43490 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PROM1O43490 MTMR9LP-203ENST00000426597 1545 ntBASIC17.75■□□□□ 0.43
PROM1O43490 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
PROM1O43490 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
PROM1O43490 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.75■□□□□ 0.43
PROM1O43490 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PROM1O43490 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PROM1O43490 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PROM1O43490 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.75■□□□□ 0.43
PROM1O43490 NEFHP1-201ENST00000412845 2629 ntBASIC17.75■□□□□ 0.43
PROM1O43490 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PROM1O43490 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PROM1O43490 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.75■□□□□ 0.43
PROM1O43490 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PROM1O43490 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PROM1O43490 AL138781.2-201ENST00000617896 1843 ntBASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms