Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 KRT8P7-201ENST00000533003 1432 ntBASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL6A6A6NMZ7 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
COL6A6A6NMZ7 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC16.83■□□□□ 0.29
COL6A6A6NMZ7 KRT89P-201ENST00000620027 1478 ntBASIC16.83■□□□□ 0.29
COL6A6A6NMZ7 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
COL6A6A6NMZ7 KRT8P3-201ENST00000519669 1449 ntBASIC16.83■□□□□ 0.29
COL6A6A6NMZ7 HLA-J-201ENST00000462773 1622 ntBASIC16.83■□□□□ 0.29
COL6A6A6NMZ7 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC16.83■□□□□ 0.29
COL6A6A6NMZ7 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.83■□□□□ 0.28
COL6A6A6NMZ7 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC16.83■□□□□ 0.28
COL6A6A6NMZ7 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A6A6NMZ7 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A6A6NMZ7 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A6A6NMZ7 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.83■□□□□ 0.28
COL6A6A6NMZ7 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.83■□□□□ 0.28
COL6A6A6NMZ7 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.83■□□□□ 0.28
COL6A6A6NMZ7 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC16.83■□□□□ 0.28
COL6A6A6NMZ7 AC114341.1-201ENST00000618070 349 ntBASIC16.83■□□□□ 0.28
COL6A6A6NMZ7 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A6A6NMZ7 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC16.83■□□□□ 0.28
COL6A6A6NMZ7 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC16.83■□□□□ 0.28
COL6A6A6NMZ7 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A6A6NMZ7 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A6A6NMZ7 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL6A6A6NMZ7 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 AC112482.1-201ENST00000492080 688 ntBASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 AC024563.2-201ENST00000603282 481 ntBASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 AC133561.1-201ENST00000568600 2415 ntBASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 AP005212.1-201ENST00000581547 1997 ntBASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL6A6A6NMZ7 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 WBP2-203ENST00000433525 928 ntTSL 2 BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 AC005336.2-201ENST00000593183 939 ntBASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 AC008735.5-201ENST00000623544 497 ntBASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 Z83851.2-201ENST00000609564 659 ntBASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
COL6A6A6NMZ7 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
COL6A6A6NMZ7 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms