Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC25.27■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC25.27■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC25.27■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC25.27■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC25.27■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC25.27■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC25.27■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC25.27■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 AL445675.2-201ENST00000620291 557 ntBASIC25.27■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC25.27■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC25.27■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SENP3-EIF4A1A0A087X0R7 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC25.26■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC25.26■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 PPP1R14BP5-201ENST00000440334 435 ntBASIC25.26■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC25.26■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC25.26■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 LINC01568-207ENST00000641790 1380 ntBASIC25.26■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 AC073508.3-201ENST00000619697 1419 ntBASIC25.26■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 GAS2L1P1-201ENST00000420145 1480 ntBASIC25.26■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC25.25■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC25.25■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC25.25■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC25.25■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC25.25■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC25.25■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 RARRES2P10-201ENST00000564312 460 ntBASIC25.25■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 KRT16P1-201ENST00000399124 1418 ntBASIC25.25■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC25.25■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC25.25■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 AL499627.1-201ENST00000569373 2188 ntBASIC25.25■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC25.25■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC25.24■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC25.24■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC25.24■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC25.24■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC25.24■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 PVRIG2P-201ENST00000435460 978 ntBASIC25.24■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 AC009947.2-201ENST00000444014 672 ntBASIC25.24■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC25.24■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC25.24■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC25.24■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC25.23■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 FEM1AP3-201ENST00000403722 1741 ntBASIC25.23■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC25.23■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC25.23■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC25.23■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 CLN6-204ENST00000564752 900 ntTSL 3 BASIC25.23■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 AC011298.2-201ENST00000617989 482 ntBASIC25.23■■□□□ 1.63
SENP3-EIF4A1A0A087X0R7 CLN6-214ENST00000636314 442 ntTSL 3 BASIC25.23■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms