Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 BUB3-202ENST00000368859 667 ntTSL 3 BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 DUX4L26-201ENST00000489078 1255 ntBASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 AL512604.3-201ENST00000569583 964 ntBASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
COL4A3BPQ9Y5P4 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
COL4A3BPQ9Y5P4 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
COL4A3BPQ9Y5P4 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A3BPQ9Y5P4 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.95■□□□□ 0.94
COL4A3BPQ9Y5P4 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
COL4A3BPQ9Y5P4 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A3BPQ9Y5P4 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A3BPQ9Y5P4 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A3BPQ9Y5P4 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A3BPQ9Y5P4 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A3BPQ9Y5P4 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
COL4A3BPQ9Y5P4 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
COL4A3BPQ9Y5P4 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
COL4A3BPQ9Y5P4 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.95■□□□□ 0.94
COL4A3BPQ9Y5P4 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 AL590326.2-201ENST00000625139 305 ntBASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 AC141257.4-201ENST00000634557 245 ntBASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 AC136944.6-201ENST00000634818 245 ntBASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL4A3BPQ9Y5P4 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 AC117947.1-201ENST00000427448 529 ntBASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 AL445228.2-201ENST00000605589 952 ntBASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 AC083906.6-201ENST00000641366 219 ntBASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 KRT8P45-201ENST00000414328 1447 ntBASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
COL4A3BPQ9Y5P4 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms