Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 PTBP1P-201ENST00000554374 1601 ntBASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.53■□□□□ 0.4
VCX3AQ9NNX9 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 AC108860.2-201ENST00000562760 2183 ntBASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 PTMA-205ENST00000410064 814 ntTSL 2 BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 GRAMD4P7-201ENST00000578182 1232 ntBASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.52■□□□□ 0.4
VCX3AQ9NNX9 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
VCX3AQ9NNX9 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VCX3AQ9NNX9 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.52■□□□□ 0.39
VCX3AQ9NNX9 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
VCX3AQ9NNX9 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
VCX3AQ9NNX9 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.39
VCX3AQ9NNX9 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.39
VCX3AQ9NNX9 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC17.52■□□□□ 0.39
VCX3AQ9NNX9 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
VCX3AQ9NNX9 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
VCX3AQ9NNX9 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
VCX3AQ9NNX9 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.52■□□□□ 0.39
VCX3AQ9NNX9 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.52■□□□□ 0.39
VCX3AQ9NNX9 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 KRT87P-202ENST00000534226 1464 ntBASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 ANO7L1-203ENST00000602586 1720 ntBASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 AC233992.3-201ENST00000607491 485 ntBASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
VCX3AQ9NNX9 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.5■□□□□ 0.39
VCX3AQ9NNX9 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.5■□□□□ 0.39
VCX3AQ9NNX9 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
VCX3AQ9NNX9 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
VCX3AQ9NNX9 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VCX3AQ9NNX9 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VCX3AQ9NNX9 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.5■□□□□ 0.39
VCX3AQ9NNX9 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VCX3AQ9NNX9 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC17.5■□□□□ 0.39
VCX3AQ9NNX9 AC087633.2-202ENST00000565166 1439 ntBASIC17.5■□□□□ 0.39
VCX3AQ9NNX9 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VCX3AQ9NNX9 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VCX3AQ9NNX9 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VCX3AQ9NNX9 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VCX3AQ9NNX9 AC091799.1-201ENST00000422823 811 ntBASIC17.5■□□□□ 0.39
VCX3AQ9NNX9 CDV3P1-201ENST00000471403 739 ntBASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms