Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIME1Q9H400 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LIME1Q9H400 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIME1Q9H400 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC16.45■□□□□ 0.22
LIME1Q9H400 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LIME1Q9H400 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIME1Q9H400 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIME1Q9H400 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIME1Q9H400 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
LIME1Q9H400 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
LIME1Q9H400 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LIME1Q9H400 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIME1Q9H400 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
LIME1Q9H400 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LIME1Q9H400 ATP5G2P1-201ENST00000433580 426 ntBASIC16.45■□□□□ 0.22
LIME1Q9H400 CKBP1-201ENST00000565489 1086 ntBASIC16.45■□□□□ 0.22
LIME1Q9H400 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.45■□□□□ 0.22
LIME1Q9H400 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
LIME1Q9H400 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC16.45■□□□□ 0.22
LIME1Q9H400 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIME1Q9H400 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC16.45■□□□□ 0.22
LIME1Q9H400 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
LIME1Q9H400 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIME1Q9H400 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
LIME1Q9H400 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.45■□□□□ 0.22
LIME1Q9H400 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIME1Q9H400 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LIME1Q9H400 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIME1Q9H400 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
LIME1Q9H400 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
LIME1Q9H400 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC16.45■□□□□ 0.22
LIME1Q9H400 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC16.45■□□□□ 0.22
LIME1Q9H400 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC16.45■□□□□ 0.22
LIME1Q9H400 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
LIME1Q9H400 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC16.44■□□□□ 0.22
LIME1Q9H400 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LIME1Q9H400 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LIME1Q9H400 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
LIME1Q9H400 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LIME1Q9H400 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LIME1Q9H400 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC16.44■□□□□ 0.22
LIME1Q9H400 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LIME1Q9H400 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC16.44■□□□□ 0.22
LIME1Q9H400 AP000347.1-202ENST00000435868 847 ntBASIC16.44■□□□□ 0.22
LIME1Q9H400 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.44■□□□□ 0.22
LIME1Q9H400 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.44■□□□□ 0.22
LIME1Q9H400 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC16.44■□□□□ 0.22
LIME1Q9H400 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC16.44■□□□□ 0.22
LIME1Q9H400 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
LIME1Q9H400 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LIME1Q9H400 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LIME1Q9H400 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LIME1Q9H400 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LIME1Q9H400 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC16.44■□□□□ 0.22
LIME1Q9H400 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC16.44■□□□□ 0.22
LIME1Q9H400 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
LIME1Q9H400 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
LIME1Q9H400 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC16.44■□□□□ 0.22
LIME1Q9H400 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LIME1Q9H400 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.44■□□□□ 0.22
LIME1Q9H400 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC16.44■□□□□ 0.22
LIME1Q9H400 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC16.44■□□□□ 0.22
LIME1Q9H400 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
LIME1Q9H400 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LIME1Q9H400 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC16.43■□□□□ 0.22
LIME1Q9H400 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LIME1Q9H400 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIME1Q9H400 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIME1Q9H400 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIME1Q9H400 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
LIME1Q9H400 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
LIME1Q9H400 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIME1Q9H400 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIME1Q9H400 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
LIME1Q9H400 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LIME1Q9H400 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIME1Q9H400 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
LIME1Q9H400 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIME1Q9H400 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
LIME1Q9H400 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.43■□□□□ 0.22
LIME1Q9H400 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC16.43■□□□□ 0.22
LIME1Q9H400 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC16.43■□□□□ 0.22
LIME1Q9H400 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC16.43■□□□□ 0.22
LIME1Q9H400 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC16.43■□□□□ 0.22
LIME1Q9H400 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LIME1Q9H400 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC16.43■□□□□ 0.22
LIME1Q9H400 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LIME1Q9H400 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIME1Q9H400 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
LIME1Q9H400 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LIME1Q9H400 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LIME1Q9H400 AP001271.2-201ENST00000624018 1556 ntBASIC16.43■□□□□ 0.22
LIME1Q9H400 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
LIME1Q9H400 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIME1Q9H400 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
LIME1Q9H400 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIME1Q9H400 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIME1Q9H400 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LIME1Q9H400 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LIME1Q9H400 KRT8P41-201ENST00000533985 1514 ntBASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms