Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
MMP28Q9H239 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MMP28Q9H239 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC16.54■□□□□ 0.24
MMP28Q9H239 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC16.54■□□□□ 0.24
MMP28Q9H239 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC16.54■□□□□ 0.24
MMP28Q9H239 AL589743.5-201ENST00000616611 1050 ntBASIC16.54■□□□□ 0.24
MMP28Q9H239 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MMP28Q9H239 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MMP28Q9H239 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
MMP28Q9H239 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
MMP28Q9H239 AC011270.2-201ENST00000624293 2550 ntBASIC16.54■□□□□ 0.24
MMP28Q9H239 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MMP28Q9H239 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MMP28Q9H239 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MMP28Q9H239 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
MMP28Q9H239 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
MMP28Q9H239 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
MMP28Q9H239 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC16.54■□□□□ 0.24
MMP28Q9H239 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
MMP28Q9H239 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MMP28Q9H239 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
MMP28Q9H239 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MMP28Q9H239 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
MMP28Q9H239 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC16.53■□□□□ 0.24
MMP28Q9H239 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
MMP28Q9H239 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
MMP28Q9H239 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
MMP28Q9H239 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.53■□□□□ 0.24
MMP28Q9H239 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
MMP28Q9H239 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.53■□□□□ 0.24
MMP28Q9H239 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
MMP28Q9H239 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 AL355472.2-201ENST00000422958 438 ntBASIC16.53■□□□□ 0.24
MMP28Q9H239 TSPY6P-201ENST00000448518 926 ntBASIC16.53■□□□□ 0.24
MMP28Q9H239 CD99P1-205ENST00000527459 561 ntBASIC16.53■□□□□ 0.24
MMP28Q9H239 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC16.53■□□□□ 0.24
MMP28Q9H239 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.53■□□□□ 0.24
MMP28Q9H239 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
MMP28Q9H239 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
MMP28Q9H239 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
MMP28Q9H239 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
MMP28Q9H239 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC16.53■□□□□ 0.24
MMP28Q9H239 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC16.53■□□□□ 0.24
MMP28Q9H239 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MMP28Q9H239 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MMP28Q9H239 GNAS-203ENST00000306120 1878 ntBASIC16.52■□□□□ 0.24
MMP28Q9H239 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.52■□□□□ 0.24
MMP28Q9H239 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC16.52■□□□□ 0.24
MMP28Q9H239 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
MMP28Q9H239 AC012317.2-201ENST00000623305 2251 ntBASIC16.52■□□□□ 0.24
MMP28Q9H239 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
MMP28Q9H239 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC16.52■□□□□ 0.24
MMP28Q9H239 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
MMP28Q9H239 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.52■□□□□ 0.24
MMP28Q9H239 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.24
MMP28Q9H239 METTL15-202ENST00000403099 795 ntTSL 5 BASIC16.52■□□□□ 0.24
MMP28Q9H239 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC16.52■□□□□ 0.24
MMP28Q9H239 PHB2-213ENST00000546111 858 ntTSL 2 BASIC16.52■□□□□ 0.24
MMP28Q9H239 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC16.52■□□□□ 0.24
MMP28Q9H239 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC16.52■□□□□ 0.24
MMP28Q9H239 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC16.52■□□□□ 0.24
MMP28Q9H239 AC142086.2-201ENST00000569753 217 ntBASIC16.52■□□□□ 0.24
MMP28Q9H239 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC16.52■□□□□ 0.24
MMP28Q9H239 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
MMP28Q9H239 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC16.52■□□□□ 0.24
MMP28Q9H239 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
MMP28Q9H239 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
MMP28Q9H239 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
MMP28Q9H239 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
MMP28Q9H239 PKD1P1-201ENST00000458669 6805 ntBASIC16.52■□□□□ 0.23
MMP28Q9H239 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.52■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms