Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC42Q96M95 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC42Q96M95 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.25■□□□□ 0.83
CCDC42Q96M95 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC42Q96M95 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC42Q96M95 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC42Q96M95 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC42Q96M95 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC42Q96M95 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.25■□□□□ 0.83
CCDC42Q96M95 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.25■□□□□ 0.83
CCDC42Q96M95 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC42Q96M95 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC42Q96M95 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC42Q96M95 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC42Q96M95 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC42Q96M95 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC42Q96M95 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
CCDC42Q96M95 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC20.25■□□□□ 0.83
CCDC42Q96M95 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC42Q96M95 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC20.25■□□□□ 0.83
CCDC42Q96M95 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC42Q96M95 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC42Q96M95 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC42Q96M95 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
CCDC42Q96M95 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC42Q96M95 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC42Q96M95 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC42Q96M95 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.24■□□□□ 0.83
CCDC42Q96M95 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC42Q96M95 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC42Q96M95 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC42Q96M95 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC42Q96M95 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC42Q96M95 UNC93B5-201ENST00000530315 699 ntBASIC20.24■□□□□ 0.83
CCDC42Q96M95 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.24■□□□□ 0.83
CCDC42Q96M95 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC42Q96M95 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC42Q96M95 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC42Q96M95 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CCDC42Q96M95 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CCDC42Q96M95 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC42Q96M95 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC42Q96M95 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC42Q96M95 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC20.24■□□□□ 0.83
CCDC42Q96M95 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC42Q96M95 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC42Q96M95 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.23■□□□□ 0.83
CCDC42Q96M95 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC42Q96M95 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC42Q96M95 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC42Q96M95 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC42Q96M95 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC42Q96M95 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CCDC42Q96M95 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.23■□□□□ 0.83
CCDC42Q96M95 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.23■□□□□ 0.83
CCDC42Q96M95 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.23■□□□□ 0.83
CCDC42Q96M95 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.23■□□□□ 0.83
CCDC42Q96M95 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC42Q96M95 AL499627.1-201ENST00000569373 2188 ntBASIC20.23■□□□□ 0.83
CCDC42Q96M95 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CCDC42Q96M95 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC20.23■□□□□ 0.83
CCDC42Q96M95 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CCDC42Q96M95 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.22■□□□□ 0.83
CCDC42Q96M95 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC42Q96M95 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
CCDC42Q96M95 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
CCDC42Q96M95 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC42Q96M95 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC42Q96M95 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC42Q96M95 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC42Q96M95 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC42Q96M95 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC42Q96M95 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC42Q96M95 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.22■□□□□ 0.83
CCDC42Q96M95 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC42Q96M95 MIR935-201ENST00000401179 91 ntBASIC20.22■□□□□ 0.83
CCDC42Q96M95 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC42Q96M95 AC142086.2-201ENST00000569753 217 ntBASIC20.22■□□□□ 0.83
CCDC42Q96M95 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC42Q96M95 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC42Q96M95 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC42Q96M95 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC42Q96M95 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC42Q96M95 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC42Q96M95 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CCDC42Q96M95 MTMR9LP-203ENST00000426597 1545 ntBASIC20.22■□□□□ 0.83
CCDC42Q96M95 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC20.22■□□□□ 0.83
CCDC42Q96M95 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.21■□□□□ 0.83
CCDC42Q96M95 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC42Q96M95 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC42Q96M95 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC42Q96M95 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC42Q96M95 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC20.21■□□□□ 0.83
CCDC42Q96M95 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC42Q96M95 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.21■□□□□ 0.83
CCDC42Q96M95 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
CCDC42Q96M95 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC42Q96M95 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC42Q96M95 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CCDC42Q96M95 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms