Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.08■□□□□ 0.64
CHFRQ96EP1 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CHFRQ96EP1 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
CHFRQ96EP1 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
CHFRQ96EP1 KRT8P32-201ENST00000512863 1461 ntBASIC19.08■□□□□ 0.64
CHFRQ96EP1 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHFRQ96EP1 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
CHFRQ96EP1 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
CHFRQ96EP1 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
CHFRQ96EP1 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.07■□□□□ 0.64
CHFRQ96EP1 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CHFRQ96EP1 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CHFRQ96EP1 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CHFRQ96EP1 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHFRQ96EP1 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.07■□□□□ 0.64
CHFRQ96EP1 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CHFRQ96EP1 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC19.07■□□□□ 0.64
CHFRQ96EP1 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19.07■□□□□ 0.64
CHFRQ96EP1 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.07■□□□□ 0.64
CHFRQ96EP1 AC111152.3-201ENST00000569699 673 ntBASIC19.07■□□□□ 0.64
CHFRQ96EP1 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.07■□□□□ 0.64
CHFRQ96EP1 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
CHFRQ96EP1 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHFRQ96EP1 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHFRQ96EP1 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHFRQ96EP1 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.07■□□□□ 0.64
CHFRQ96EP1 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHFRQ96EP1 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CHFRQ96EP1 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.07■□□□□ 0.64
CHFRQ96EP1 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.07■□□□□ 0.64
CHFRQ96EP1 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CHFRQ96EP1 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CHFRQ96EP1 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHFRQ96EP1 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHFRQ96EP1 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.06■□□□□ 0.64
CHFRQ96EP1 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.06■□□□□ 0.64
CHFRQ96EP1 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHFRQ96EP1 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHFRQ96EP1 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.06■□□□□ 0.64
CHFRQ96EP1 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHFRQ96EP1 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHFRQ96EP1 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
CHFRQ96EP1 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
CHFRQ96EP1 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHFRQ96EP1 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHFRQ96EP1 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHFRQ96EP1 MIR564-202ENST00000385049 94 ntBASIC19.06■□□□□ 0.64
CHFRQ96EP1 TSPY19P-201ENST00000418461 509 ntBASIC19.06■□□□□ 0.64
CHFRQ96EP1 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHFRQ96EP1 AP000347.1-202ENST00000435868 847 ntBASIC19.06■□□□□ 0.64
CHFRQ96EP1 TSPY18P-201ENST00000441642 509 ntBASIC19.06■□□□□ 0.64
CHFRQ96EP1 KRT17P6-201ENST00000453795 1220 ntBASIC19.06■□□□□ 0.64
CHFRQ96EP1 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.06■□□□□ 0.64
CHFRQ96EP1 KLK8-205ENST00000593490 267 ntTSL 3 BASIC19.06■□□□□ 0.64
CHFRQ96EP1 IFNL4P1-201ENST00000607083 540 ntBASIC19.06■□□□□ 0.64
CHFRQ96EP1 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.06■□□□□ 0.64
CHFRQ96EP1 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CHFRQ96EP1 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.06■□□□□ 0.64
CHFRQ96EP1 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.06■□□□□ 0.64
CHFRQ96EP1 IRX1P1-201ENST00000438849 1838 ntBASIC19.06■□□□□ 0.64
CHFRQ96EP1 Z83836.1-201ENST00000624605 1642 ntBASIC19.06■□□□□ 0.64
CHFRQ96EP1 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.06■□□□□ 0.64
CHFRQ96EP1 KRT8P7-201ENST00000533003 1432 ntBASIC19.06■□□□□ 0.64
CHFRQ96EP1 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CHFRQ96EP1 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CHFRQ96EP1 FEM1AP3-201ENST00000403722 1741 ntBASIC19.05■□□□□ 0.64
CHFRQ96EP1 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHFRQ96EP1 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHFRQ96EP1 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.05■□□□□ 0.64
CHFRQ96EP1 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.05■□□□□ 0.64
CHFRQ96EP1 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.05■□□□□ 0.64
CHFRQ96EP1 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHFRQ96EP1 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHFRQ96EP1 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.05■□□□□ 0.64
CHFRQ96EP1 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.05■□□□□ 0.64
CHFRQ96EP1 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHFRQ96EP1 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHFRQ96EP1 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CHFRQ96EP1 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.05■□□□□ 0.64
CHFRQ96EP1 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHFRQ96EP1 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.05■□□□□ 0.64
CHFRQ96EP1 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CHFRQ96EP1 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.05■□□□□ 0.64
CHFRQ96EP1 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.05■□□□□ 0.64
CHFRQ96EP1 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHFRQ96EP1 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CHFRQ96EP1 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
CHFRQ96EP1 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHFRQ96EP1 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.05■□□□□ 0.64
CHFRQ96EP1 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHFRQ96EP1 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHFRQ96EP1 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHFRQ96EP1 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CHFRQ96EP1 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CHFRQ96EP1 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.05■□□□□ 0.64
CHFRQ96EP1 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CHFRQ96EP1 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CHFRQ96EP1 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CHFRQ96EP1 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
CHFRQ96EP1 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms