Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC12.63□□□□□ -0.39
ALMS1Q8TCU4 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
ALMS1Q8TCU4 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
ALMS1Q8TCU4 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
ALMS1Q8TCU4 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
ALMS1Q8TCU4 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
ALMS1Q8TCU4 HIST2H3DP1-201ENST00000401004 416 ntBASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 RCC2P3-201ENST00000418112 1537 ntBASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 DNAJB3-201ENST00000446806 729 ntBASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 ALG1L5P-201ENST00000482043 771 ntBASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 DET1-207ENST00000564406 2315 ntTSL 2 BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 AL591424.1-201ENST00000442569 1213 ntBASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC12.62□□□□□ -0.39
ALMS1Q8TCU4 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 RPS2P1-201ENST00000434010 821 ntBASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 ELP6-205ENST00000439305 880 ntTSL 2 BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 GUSBP12-201ENST00000513727 720 ntBASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 RPS15-207ENST00000591032 550 ntTSL 3 BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
ALMS1Q8TCU4 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
ALMS1Q8TCU4 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ALMS1Q8TCU4 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC12.6□□□□□ -0.39
ALMS1Q8TCU4 CYMP-203ENST00000474680 1263 ntBASIC12.6□□□□□ -0.39
ALMS1Q8TCU4 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
ALMS1Q8TCU4 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
ALMS1Q8TCU4 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC12.6□□□□□ -0.39
ALMS1Q8TCU4 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
ALMS1Q8TCU4 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC12.6□□□□□ -0.39
ALMS1Q8TCU4 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ALMS1Q8TCU4 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC12.6□□□□□ -0.39
ALMS1Q8TCU4 RBSN-204ENST00000449050 903 ntTSL 2 BASIC12.6□□□□□ -0.39
ALMS1Q8TCU4 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
ALMS1Q8TCU4 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ALMS1Q8TCU4 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
ALMS1Q8TCU4 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
ALMS1Q8TCU4 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
ALMS1Q8TCU4 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms