Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
USP48Q86UV5 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
USP48Q86UV5 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC22.95■■□□□ 1.26
USP48Q86UV5 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC22.95■■□□□ 1.26
USP48Q86UV5 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
USP48Q86UV5 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
USP48Q86UV5 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC22.95■■□□□ 1.26
USP48Q86UV5 KRT17P6-201ENST00000453795 1220 ntBASIC22.95■■□□□ 1.26
USP48Q86UV5 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
USP48Q86UV5 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC22.95■■□□□ 1.26
USP48Q86UV5 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
USP48Q86UV5 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC22.95■■□□□ 1.26
USP48Q86UV5 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC22.95■■□□□ 1.26
USP48Q86UV5 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC22.95■■□□□ 1.26
USP48Q86UV5 AC111152.3-201ENST00000569699 673 ntBASIC22.95■■□□□ 1.26
USP48Q86UV5 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC22.95■■□□□ 1.26
USP48Q86UV5 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
USP48Q86UV5 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC22.95■■□□□ 1.26
USP48Q86UV5 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC22.95■■□□□ 1.26
USP48Q86UV5 GPALPP1-207ENST00000611650 899 ntBASIC22.95■■□□□ 1.26
USP48Q86UV5 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
USP48Q86UV5 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
USP48Q86UV5 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
USP48Q86UV5 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC22.95■■□□□ 1.26
USP48Q86UV5 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
USP48Q86UV5 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC22.95■■□□□ 1.26
USP48Q86UV5 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
USP48Q86UV5 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC22.94■■□□□ 1.26
USP48Q86UV5 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
USP48Q86UV5 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
USP48Q86UV5 AC009237.14-201ENST00000609975 1594 ntBASIC22.94■■□□□ 1.26
USP48Q86UV5 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
USP48Q86UV5 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC22.94■■□□□ 1.26
USP48Q86UV5 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
USP48Q86UV5 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
USP48Q86UV5 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
USP48Q86UV5 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC22.94■■□□□ 1.26
USP48Q86UV5 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
USP48Q86UV5 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
USP48Q86UV5 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
USP48Q86UV5 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
USP48Q86UV5 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
USP48Q86UV5 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC22.93■■□□□ 1.26
USP48Q86UV5 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
USP48Q86UV5 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC22.93■■□□□ 1.26
USP48Q86UV5 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
USP48Q86UV5 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
USP48Q86UV5 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
USP48Q86UV5 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
USP48Q86UV5 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
USP48Q86UV5 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
USP48Q86UV5 TP73-202ENST00000354437 2140 ntTSL 5 BASIC22.93■■□□□ 1.26
USP48Q86UV5 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC22.93■■□□□ 1.26
USP48Q86UV5 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC22.93■■□□□ 1.26
USP48Q86UV5 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
USP48Q86UV5 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
USP48Q86UV5 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
USP48Q86UV5 HBZP1-201ENST00000354915 429 ntBASIC22.93■■□□□ 1.26
USP48Q86UV5 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC22.93■■□□□ 1.26
USP48Q86UV5 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC22.93■■□□□ 1.26
USP48Q86UV5 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC22.93■■□□□ 1.26
USP48Q86UV5 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC22.93■■□□□ 1.26
USP48Q86UV5 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC22.93■■□□□ 1.26
USP48Q86UV5 AC093503.3-201ENST00000624917 2352 ntBASIC22.93■■□□□ 1.26
USP48Q86UV5 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
USP48Q86UV5 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
USP48Q86UV5 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
USP48Q86UV5 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC22.93■■□□□ 1.26
USP48Q86UV5 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC22.93■■□□□ 1.26
USP48Q86UV5 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
USP48Q86UV5 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
USP48Q86UV5 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC22.92■■□□□ 1.26
USP48Q86UV5 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
USP48Q86UV5 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
USP48Q86UV5 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
USP48Q86UV5 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
USP48Q86UV5 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC22.92■■□□□ 1.26
USP48Q86UV5 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
USP48Q86UV5 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC22.92■■□□□ 1.26
USP48Q86UV5 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC22.92■■□□□ 1.26
USP48Q86UV5 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
USP48Q86UV5 AL645929.1-201ENST00000420084 975 ntBASIC22.92■■□□□ 1.26
USP48Q86UV5 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC22.92■■□□□ 1.26
USP48Q86UV5 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC22.92■■□□□ 1.26
USP48Q86UV5 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC22.92■■□□□ 1.26
USP48Q86UV5 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC22.92■■□□□ 1.26
USP48Q86UV5 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC22.92■■□□□ 1.26
USP48Q86UV5 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
USP48Q86UV5 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC22.92■■□□□ 1.26
USP48Q86UV5 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
USP48Q86UV5 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC22.92■■□□□ 1.26
USP48Q86UV5 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC22.92■■□□□ 1.26
USP48Q86UV5 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC22.92■■□□□ 1.26
USP48Q86UV5 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
USP48Q86UV5 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
USP48Q86UV5 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC22.91■■□□□ 1.26
USP48Q86UV5 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC22.91■■□□□ 1.26
USP48Q86UV5 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
USP48Q86UV5 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
USP48Q86UV5 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms