Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.87■□□□□ 0.77
CHD9Q3L8U1 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CHD9Q3L8U1 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CHD9Q3L8U1 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CHD9Q3L8U1 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC19.87■□□□□ 0.77
CHD9Q3L8U1 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC19.87■□□□□ 0.77
CHD9Q3L8U1 AL512353.2-201ENST00000448759 1962 ntBASIC19.87■□□□□ 0.77
CHD9Q3L8U1 AC020907.5-201ENST00000624372 1936 ntBASIC19.87■□□□□ 0.77
CHD9Q3L8U1 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CHD9Q3L8U1 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.87■□□□□ 0.77
CHD9Q3L8U1 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CHD9Q3L8U1 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.87■□□□□ 0.77
CHD9Q3L8U1 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CHD9Q3L8U1 NUS1P2-201ENST00000417358 873 ntBASIC19.87■□□□□ 0.77
CHD9Q3L8U1 FIS1-203ENST00000442303 631 ntTSL 3 BASIC19.87■□□□□ 0.77
CHD9Q3L8U1 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
CHD9Q3L8U1 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC19.87■□□□□ 0.77
CHD9Q3L8U1 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CHD9Q3L8U1 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CHD9Q3L8U1 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CHD9Q3L8U1 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CHD9Q3L8U1 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC19.87■□□□□ 0.77
CHD9Q3L8U1 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.87■□□□□ 0.77
CHD9Q3L8U1 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CHD9Q3L8U1 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CHD9Q3L8U1 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHD9Q3L8U1 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC19.86■□□□□ 0.77
CHD9Q3L8U1 FGFR3P6-201ENST00000457012 610 ntBASIC19.86■□□□□ 0.77
CHD9Q3L8U1 MIR5100-201ENST00000579544 119 ntBASIC19.86■□□□□ 0.77
CHD9Q3L8U1 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC19.86■□□□□ 0.77
CHD9Q3L8U1 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHD9Q3L8U1 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.86■□□□□ 0.77
CHD9Q3L8U1 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.86■□□□□ 0.77
CHD9Q3L8U1 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CHD9Q3L8U1 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHD9Q3L8U1 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.86■□□□□ 0.77
CHD9Q3L8U1 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHD9Q3L8U1 UPF3AP3-201ENST00000420996 769 ntBASIC19.86■□□□□ 0.77
CHD9Q3L8U1 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.86■□□□□ 0.77
CHD9Q3L8U1 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
CHD9Q3L8U1 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHD9Q3L8U1 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHD9Q3L8U1 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC19.85■□□□□ 0.77
CHD9Q3L8U1 AL355877.3-201ENST00000622820 899 ntBASIC19.85■□□□□ 0.77
CHD9Q3L8U1 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.85■□□□□ 0.77
CHD9Q3L8U1 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHD9Q3L8U1 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.85■□□□□ 0.77
CHD9Q3L8U1 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHD9Q3L8U1 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHD9Q3L8U1 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHD9Q3L8U1 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.85■□□□□ 0.77
CHD9Q3L8U1 IGHV3-41-201ENST00000613121 348 ntBASIC19.85■□□□□ 0.77
CHD9Q3L8U1 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
CHD9Q3L8U1 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.85■□□□□ 0.77
CHD9Q3L8U1 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHD9Q3L8U1 AC008608.2-201ENST00000606089 416 ntBASIC19.85■□□□□ 0.77
CHD9Q3L8U1 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CHD9Q3L8U1 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CHD9Q3L8U1 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CHD9Q3L8U1 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.84■□□□□ 0.77
CHD9Q3L8U1 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
CHD9Q3L8U1 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CHD9Q3L8U1 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHD9Q3L8U1 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHD9Q3L8U1 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.84■□□□□ 0.77
CHD9Q3L8U1 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.84■□□□□ 0.77
CHD9Q3L8U1 PAM16-208ENST00000573553 722 ntTSL 2 BASIC19.84■□□□□ 0.77
CHD9Q3L8U1 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC19.84■□□□□ 0.77
CHD9Q3L8U1 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
CHD9Q3L8U1 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC19.84■□□□□ 0.77
CHD9Q3L8U1 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.84■□□□□ 0.77
CHD9Q3L8U1 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHD9Q3L8U1 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHD9Q3L8U1 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHD9Q3L8U1 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHD9Q3L8U1 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.84■□□□□ 0.77
CHD9Q3L8U1 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.84■□□□□ 0.77
CHD9Q3L8U1 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHD9Q3L8U1 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
CHD9Q3L8U1 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHD9Q3L8U1 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHD9Q3L8U1 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHD9Q3L8U1 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC19.83■□□□□ 0.77
CHD9Q3L8U1 AC132008.2-207ENST00000454517 770 ntBASIC19.83■□□□□ 0.77
CHD9Q3L8U1 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHD9Q3L8U1 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.83■□□□□ 0.77
CHD9Q3L8U1 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19.83■□□□□ 0.77
CHD9Q3L8U1 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHD9Q3L8U1 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHD9Q3L8U1 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHD9Q3L8U1 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.83■□□□□ 0.77
CHD9Q3L8U1 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC19.83■□□□□ 0.77
CHD9Q3L8U1 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.83■□□□□ 0.76
CHD9Q3L8U1 AL591424.1-201ENST00000442569 1213 ntBASIC19.83■□□□□ 0.76
CHD9Q3L8U1 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC19.83■□□□□ 0.76
CHD9Q3L8U1 AC099778.1-201ENST00000568593 1911 ntBASIC19.83■□□□□ 0.76
CHD9Q3L8U1 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CHD9Q3L8U1 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CHD9Q3L8U1 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
CHD9Q3L8U1 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms