Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MRE11P49959 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MRE11P49959 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MRE11P49959 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.82■■□□□ 1.08
MRE11P49959 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
MRE11P49959 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC21.81■■□□□ 1.08
MRE11P49959 AC087633.2-202ENST00000565166 1439 ntBASIC21.81■■□□□ 1.08
MRE11P49959 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
MRE11P49959 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
MRE11P49959 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MRE11P49959 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MRE11P49959 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC21.81■■□□□ 1.08
MRE11P49959 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MRE11P49959 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC21.81■■□□□ 1.08
MRE11P49959 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC21.81■■□□□ 1.08
MRE11P49959 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.81■■□□□ 1.08
MRE11P49959 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MRE11P49959 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.81■■□□□ 1.08
MRE11P49959 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.81■■□□□ 1.08
MRE11P49959 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
MRE11P49959 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC21.81■■□□□ 1.08
MRE11P49959 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
MRE11P49959 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MRE11P49959 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC21.81■■□□□ 1.08
MRE11P49959 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
MRE11P49959 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
MRE11P49959 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MRE11P49959 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC21.81■■□□□ 1.08
MRE11P49959 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MRE11P49959 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
MRE11P49959 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
MRE11P49959 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MRE11P49959 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC21.81■■□□□ 1.08
MRE11P49959 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MRE11P49959 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
MRE11P49959 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MRE11P49959 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MRE11P49959 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MRE11P49959 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MRE11P49959 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
MRE11P49959 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MRE11P49959 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MRE11P49959 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
MRE11P49959 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
MRE11P49959 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC21.8■■□□□ 1.08
MRE11P49959 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MRE11P49959 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.8■■□□□ 1.08
MRE11P49959 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.8■■□□□ 1.08
MRE11P49959 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MRE11P49959 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC21.8■■□□□ 1.08
MRE11P49959 BX088651.1-201ENST00000540551 451 ntBASIC21.8■■□□□ 1.08
MRE11P49959 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC21.8■■□□□ 1.08
MRE11P49959 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC21.8■■□□□ 1.08
MRE11P49959 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC21.8■■□□□ 1.08
MRE11P49959 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC21.8■■□□□ 1.08
MRE11P49959 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MRE11P49959 AC104187.1-201ENST00000607510 612 ntBASIC21.8■■□□□ 1.08
MRE11P49959 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
MRE11P49959 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
MRE11P49959 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MRE11P49959 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
MRE11P49959 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MRE11P49959 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
MRE11P49959 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
MRE11P49959 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MRE11P49959 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC21.79■■□□□ 1.08
MRE11P49959 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MRE11P49959 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
MRE11P49959 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
MRE11P49959 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MRE11P49959 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MRE11P49959 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
MRE11P49959 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.79■■□□□ 1.08
MRE11P49959 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.79■■□□□ 1.08
MRE11P49959 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MRE11P49959 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MRE11P49959 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MRE11P49959 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
MRE11P49959 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC21.79■■□□□ 1.08
MRE11P49959 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC21.79■■□□□ 1.08
MRE11P49959 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MRE11P49959 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
MRE11P49959 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
MRE11P49959 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.79■■□□□ 1.08
MRE11P49959 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MRE11P49959 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MRE11P49959 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MRE11P49959 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
MRE11P49959 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
MRE11P49959 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC21.78■■□□□ 1.08
MRE11P49959 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC21.78■■□□□ 1.08
MRE11P49959 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
MRE11P49959 ZNF815P-204ENST00000434898 1737 ntBASIC21.78■■□□□ 1.08
MRE11P49959 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC21.78■■□□□ 1.08
MRE11P49959 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC21.78■■□□□ 1.08
MRE11P49959 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.78■■□□□ 1.08
MRE11P49959 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
MRE11P49959 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
MRE11P49959 AC026366.1-201ENST00000488803 879 ntBASIC21.78■■□□□ 1.08
MRE11P49959 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms