Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
BDNFP23560 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
BDNFP23560 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.76■□□□□ 0.75
BDNFP23560 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.76■□□□□ 0.75
BDNFP23560 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BDNFP23560 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.76■□□□□ 0.75
BDNFP23560 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
BDNFP23560 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BDNFP23560 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
BDNFP23560 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BDNFP23560 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
BDNFP23560 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BDNFP23560 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
BDNFP23560 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BDNFP23560 MIR564-202ENST00000385049 94 ntBASIC19.76■□□□□ 0.75
BDNFP23560 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.76■□□□□ 0.75
BDNFP23560 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
BDNFP23560 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.76■□□□□ 0.75
BDNFP23560 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
BDNFP23560 AC112497.1-201ENST00000624824 639 ntBASIC19.76■□□□□ 0.75
BDNFP23560 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.76■□□□□ 0.75
BDNFP23560 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BDNFP23560 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BDNFP23560 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.76■□□□□ 0.75
BDNFP23560 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
BDNFP23560 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
BDNFP23560 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
BDNFP23560 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.76■□□□□ 0.75
BDNFP23560 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
BDNFP23560 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.76■□□□□ 0.75
BDNFP23560 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
BDNFP23560 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
BDNFP23560 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
BDNFP23560 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
BDNFP23560 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
BDNFP23560 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.75■□□□□ 0.75
BDNFP23560 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
BDNFP23560 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
BDNFP23560 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
BDNFP23560 STARP1-201ENST00000397973 869 ntBASIC19.75■□□□□ 0.75
BDNFP23560 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
BDNFP23560 SPDYE15P-201ENST00000424157 909 ntBASIC19.75■□□□□ 0.75
BDNFP23560 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
BDNFP23560 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.75■□□□□ 0.75
BDNFP23560 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.75■□□□□ 0.75
BDNFP23560 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC19.75■□□□□ 0.75
BDNFP23560 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.75■□□□□ 0.75
BDNFP23560 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
BDNFP23560 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.75■□□□□ 0.75
BDNFP23560 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
BDNFP23560 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
BDNFP23560 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
BDNFP23560 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
BDNFP23560 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.75■□□□□ 0.75
BDNFP23560 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
BDNFP23560 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.75■□□□□ 0.75
BDNFP23560 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.75■□□□□ 0.75
BDNFP23560 HEIH-201ENST00000623091 1652 ntBASIC19.75■□□□□ 0.75
BDNFP23560 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BDNFP23560 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BDNFP23560 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BDNFP23560 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC19.74■□□□□ 0.75
BDNFP23560 KRT18P23-201ENST00000435622 1283 ntBASIC19.74■□□□□ 0.75
BDNFP23560 AC112907.2-201ENST00000448639 330 ntBASIC19.74■□□□□ 0.75
BDNFP23560 SEC1P-202ENST00000473944 940 ntBASIC19.74■□□□□ 0.75
BDNFP23560 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BDNFP23560 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.74■□□□□ 0.75
BDNFP23560 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.74■□□□□ 0.75
BDNFP23560 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.74■□□□□ 0.75
BDNFP23560 CLN6-204ENST00000564752 900 ntTSL 3 BASIC19.74■□□□□ 0.75
BDNFP23560 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.74■□□□□ 0.75
BDNFP23560 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.74■□□□□ 0.75
BDNFP23560 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
BDNFP23560 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.74■□□□□ 0.75
BDNFP23560 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
BDNFP23560 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BDNFP23560 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
BDNFP23560 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BDNFP23560 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
BDNFP23560 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BDNFP23560 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
BDNFP23560 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
BDNFP23560 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
BDNFP23560 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.74■□□□□ 0.75
BDNFP23560 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
BDNFP23560 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
BDNFP23560 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.74■□□□□ 0.75
BDNFP23560 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
BDNFP23560 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
BDNFP23560 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
BDNFP23560 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
BDNFP23560 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
BDNFP23560 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
BDNFP23560 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC19.73■□□□□ 0.75
BDNFP23560 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
BDNFP23560 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.73■□□□□ 0.75
BDNFP23560 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.73■□□□□ 0.75
BDNFP23560 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.73■□□□□ 0.75
BDNFP23560 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.73■□□□□ 0.75
BDNFP23560 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms