Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
CSB-PGBD3P0DP91 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC24.83■■□□□ 1.56
CSB-PGBD3P0DP91 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC24.83■■□□□ 1.56
CSB-PGBD3P0DP91 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC24.83■■□□□ 1.56
CSB-PGBD3P0DP91 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC24.83■■□□□ 1.56
CSB-PGBD3P0DP91 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CSB-PGBD3P0DP91 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CSB-PGBD3P0DP91 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC24.82■■□□□ 1.56
CSB-PGBD3P0DP91 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CSB-PGBD3P0DP91 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC24.82■■□□□ 1.56
CSB-PGBD3P0DP91 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CSB-PGBD3P0DP91 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC24.82■■□□□ 1.56
CSB-PGBD3P0DP91 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CSB-PGBD3P0DP91 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC24.82■■□□□ 1.56
CSB-PGBD3P0DP91 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC24.82■■□□□ 1.56
CSB-PGBD3P0DP91 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
CSB-PGBD3P0DP91 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC24.82■■□□□ 1.56
CSB-PGBD3P0DP91 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC24.82■■□□□ 1.56
CSB-PGBD3P0DP91 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC24.82■■□□□ 1.56
CSB-PGBD3P0DP91 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC24.82■■□□□ 1.56
CSB-PGBD3P0DP91 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
CSB-PGBD3P0DP91 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC24.81■■□□□ 1.56
CSB-PGBD3P0DP91 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CSB-PGBD3P0DP91 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC24.81■■□□□ 1.56
CSB-PGBD3P0DP91 AKR1C7P-201ENST00000305623 895 ntBASIC24.81■■□□□ 1.56
CSB-PGBD3P0DP91 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CSB-PGBD3P0DP91 IGHV3-47-201ENST00000425060 335 ntBASIC24.81■■□□□ 1.56
CSB-PGBD3P0DP91 PENK-208ENST00000523051 772 ntTSL 5 BASIC24.81■■□□□ 1.56
CSB-PGBD3P0DP91 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC24.81■■□□□ 1.56
CSB-PGBD3P0DP91 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC24.81■■□□□ 1.56
CSB-PGBD3P0DP91 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
CSB-PGBD3P0DP91 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC24.81■■□□□ 1.56
CSB-PGBD3P0DP91 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CSB-PGBD3P0DP91 TEX21P-204ENST00000641479 1693 ntBASIC24.81■■□□□ 1.56
CSB-PGBD3P0DP91 HLA-A-201ENST00000376802 1334 ntBASIC24.81■■□□□ 1.56
CSB-PGBD3P0DP91 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC24.81■■□□□ 1.56
CSB-PGBD3P0DP91 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC24.81■■□□□ 1.56
CSB-PGBD3P0DP91 LINC01006-201ENST00000333319 2292 ntBASIC24.81■■□□□ 1.56
CSB-PGBD3P0DP91 PWWP2AP1-201ENST00000429776 2273 ntBASIC24.81■■□□□ 1.56
CSB-PGBD3P0DP91 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC24.8■■□□□ 1.56
CSB-PGBD3P0DP91 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
CSB-PGBD3P0DP91 IGHGP-201ENST00000390555 1178 ntBASIC24.8■■□□□ 1.56
CSB-PGBD3P0DP91 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC24.8■■□□□ 1.56
CSB-PGBD3P0DP91 TSPY12P-201ENST00000421279 868 ntBASIC24.8■■□□□ 1.56
CSB-PGBD3P0DP91 GUSBP12-201ENST00000513727 720 ntBASIC24.8■■□□□ 1.56
CSB-PGBD3P0DP91 FICD-205ENST00000552758 603 ntTSL 2 BASIC24.8■■□□□ 1.56
CSB-PGBD3P0DP91 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CSB-PGBD3P0DP91 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC24.8■■□□□ 1.56
CSB-PGBD3P0DP91 VPS51-217ENST00000639871 243 ntTSL 5 BASIC24.8■■□□□ 1.56
CSB-PGBD3P0DP91 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC24.8■■□□□ 1.56
CSB-PGBD3P0DP91 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC24.8■■□□□ 1.56
CSB-PGBD3P0DP91 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CSB-PGBD3P0DP91 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CSB-PGBD3P0DP91 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC24.8■■□□□ 1.56
CSB-PGBD3P0DP91 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CSB-PGBD3P0DP91 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
CSB-PGBD3P0DP91 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC24.79■■□□□ 1.56
CSB-PGBD3P0DP91 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
CSB-PGBD3P0DP91 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC24.79■■□□□ 1.56
CSB-PGBD3P0DP91 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CSB-PGBD3P0DP91 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CSB-PGBD3P0DP91 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CSB-PGBD3P0DP91 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CSB-PGBD3P0DP91 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CSB-PGBD3P0DP91 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
CSB-PGBD3P0DP91 NUS1P2-201ENST00000417358 873 ntBASIC24.79■■□□□ 1.56
CSB-PGBD3P0DP91 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CSB-PGBD3P0DP91 ABR-204ENST00000543210 1049 ntTSL 2 BASIC24.79■■□□□ 1.56
CSB-PGBD3P0DP91 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC24.79■■□□□ 1.56
CSB-PGBD3P0DP91 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC24.79■■□□□ 1.56
CSB-PGBD3P0DP91 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC24.79■■□□□ 1.56
CSB-PGBD3P0DP91 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC24.79■■□□□ 1.56
CSB-PGBD3P0DP91 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CSB-PGBD3P0DP91 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 AC006333.2-201ENST00000607957 2099 ntBASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 AP000593.1-201ENST00000393668 712 ntBASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 AL590627.1-203ENST00000421194 1026 ntBASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 BET1L-206ENST00000486280 665 ntTSL 3 BASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 AC024563.2-201ENST00000603282 481 ntBASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 AC034236.2-201ENST00000606662 1610 ntBASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC24.78■■□□□ 1.56
CSB-PGBD3P0DP91 NSUN5P1-202ENST00000421140 1535 ntBASIC24.77■■□□□ 1.56
CSB-PGBD3P0DP91 NSUN5P2-203ENST00000457352 1529 ntBASIC24.77■■□□□ 1.56
CSB-PGBD3P0DP91 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms