Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
APOBP04114 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
APOBP04114 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
APOBP04114 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
APOBP04114 IMP4-203ENST00000409935 958 ntTSL 5 BASIC11.69□□□□□ -0.54
APOBP04114 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
APOBP04114 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
APOBP04114 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
APOBP04114 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC11.69□□□□□ -0.54
APOBP04114 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC11.69□□□□□ -0.54
APOBP04114 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC11.69□□□□□ -0.54
APOBP04114 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC11.69□□□□□ -0.54
APOBP04114 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
APOBP04114 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC11.69□□□□□ -0.54
APOBP04114 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC11.69□□□□□ -0.54
APOBP04114 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
APOBP04114 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC11.69□□□□□ -0.54
APOBP04114 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC11.69□□□□□ -0.54
APOBP04114 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC11.69□□□□□ -0.54
APOBP04114 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC11.69□□□□□ -0.54
APOBP04114 KRT8P7-201ENST00000533003 1432 ntBASIC11.68□□□□□ -0.54
APOBP04114 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
APOBP04114 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
APOBP04114 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC11.68□□□□□ -0.54
APOBP04114 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
APOBP04114 HTR5BP-201ENST00000430851 1154 ntBASIC11.68□□□□□ -0.54
APOBP04114 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC11.68□□□□□ -0.54
APOBP04114 AC007375.3-201ENST00000600936 2314 ntBASIC11.68□□□□□ -0.54
APOBP04114 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
APOBP04114 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
APOBP04114 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
APOBP04114 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
APOBP04114 AC211486.1-202ENST00000416371 468 ntBASIC11.68□□□□□ -0.54
APOBP04114 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
APOBP04114 AC211476.1-201ENST00000503899 468 ntBASIC11.68□□□□□ -0.54
APOBP04114 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC11.68□□□□□ -0.54
APOBP04114 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC11.68□□□□□ -0.54
APOBP04114 NAT14-202ENST00000587400 416 ntTSL 5 BASIC11.68□□□□□ -0.54
APOBP04114 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC11.68□□□□□ -0.54
APOBP04114 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
APOBP04114 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
APOBP04114 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
APOBP04114 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
APOBP04114 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC11.68□□□□□ -0.54
APOBP04114 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC11.68□□□□□ -0.54
APOBP04114 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
APOBP04114 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
APOBP04114 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
APOBP04114 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
APOBP04114 MINOS1P3-201ENST00000457048 203 ntBASIC11.68□□□□□ -0.54
APOBP04114 CYMP-203ENST00000474680 1263 ntBASIC11.68□□□□□ -0.54
APOBP04114 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC11.68□□□□□ -0.54
APOBP04114 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC11.68□□□□□ -0.54
APOBP04114 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
APOBP04114 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
APOBP04114 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
APOBP04114 LINC00565-201ENST00000562710 2331 ntBASIC11.67□□□□□ -0.54
APOBP04114 HNRNPA1P28-201ENST00000424481 961 ntBASIC11.67□□□□□ -0.54
APOBP04114 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC11.67□□□□□ -0.54
APOBP04114 TEN1-204ENST00000588202 862 ntTSL 3 BASIC11.67□□□□□ -0.54
APOBP04114 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC11.67□□□□□ -0.54
APOBP04114 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
APOBP04114 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
APOBP04114 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC11.67□□□□□ -0.54
APOBP04114 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC11.67□□□□□ -0.54
APOBP04114 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC11.67□□□□□ -0.54
APOBP04114 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC11.67□□□□□ -0.54
APOBP04114 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
APOBP04114 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
APOBP04114 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC11.67□□□□□ -0.54
APOBP04114 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
APOBP04114 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
APOBP04114 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
APOBP04114 YBX2P1-201ENST00000394192 760 ntBASIC11.67□□□□□ -0.54
APOBP04114 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
APOBP04114 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
APOBP04114 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC11.67□□□□□ -0.54
APOBP04114 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC11.67□□□□□ -0.54
APOBP04114 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC11.67□□□□□ -0.54
APOBP04114 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
APOBP04114 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC11.67□□□□□ -0.54
APOBP04114 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
APOBP04114 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
APOBP04114 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
APOBP04114 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
APOBP04114 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
APOBP04114 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
APOBP04114 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
APOBP04114 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
APOBP04114 UPF3AP3-201ENST00000420996 769 ntBASIC11.67□□□□□ -0.54
APOBP04114 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC11.67□□□□□ -0.54
APOBP04114 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
APOBP04114 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC11.67□□□□□ -0.54
APOBP04114 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
APOBP04114 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC11.67□□□□□ -0.54
APOBP04114 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC11.67□□□□□ -0.54
APOBP04114 INTS4P1-201ENST00000438455 1935 ntBASIC11.67□□□□□ -0.54
APOBP04114 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
APOBP04114 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC11.67□□□□□ -0.54
APOBP04114 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms