Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.47■□□□□ 0.39
HMGN4O00479 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.47■□□□□ 0.39
HMGN4O00479 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.47■□□□□ 0.39
HMGN4O00479 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.47■□□□□ 0.39
HMGN4O00479 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.47■□□□□ 0.39
HMGN4O00479 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGN4O00479 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGN4O00479 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
HMGN4O00479 FSCN1P1-201ENST00000568912 1481 ntBASIC17.47■□□□□ 0.39
HMGN4O00479 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGN4O00479 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGN4O00479 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGN4O00479 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGN4O00479 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGN4O00479 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGN4O00479 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.47■□□□□ 0.39
HMGN4O00479 AC020763.4-201ENST00000623414 4170 ntBASIC17.47■□□□□ 0.39
HMGN4O00479 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGN4O00479 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGN4O00479 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGN4O00479 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGN4O00479 RCC2P3-201ENST00000418112 1537 ntBASIC17.47■□□□□ 0.39
HMGN4O00479 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGN4O00479 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGN4O00479 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGN4O00479 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGN4O00479 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGN4O00479 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGN4O00479 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
HMGN4O00479 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGN4O00479 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.46■□□□□ 0.39
HMGN4O00479 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HMGN4O00479 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGN4O00479 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGN4O00479 CD177P1-201ENST00000606252 935 ntBASIC17.46■□□□□ 0.39
HMGN4O00479 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.46■□□□□ 0.39
HMGN4O00479 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
HMGN4O00479 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
HMGN4O00479 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
HMGN4O00479 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HMGN4O00479 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGN4O00479 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
HMGN4O00479 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.46■□□□□ 0.39
HMGN4O00479 AL135905.2-201ENST00000584934 1404 ntBASIC17.46■□□□□ 0.39
HMGN4O00479 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.46■□□□□ 0.38
HMGN4O00479 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.46■□□□□ 0.38
HMGN4O00479 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGN4O00479 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGN4O00479 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
HMGN4O00479 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGN4O00479 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGN4O00479 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
HMGN4O00479 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.45■□□□□ 0.38
HMGN4O00479 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGN4O00479 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.45■□□□□ 0.38
HMGN4O00479 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGN4O00479 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGN4O00479 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC17.45■□□□□ 0.38
HMGN4O00479 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGN4O00479 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGN4O00479 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGN4O00479 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.45■□□□□ 0.38
HMGN4O00479 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC17.45■□□□□ 0.38
HMGN4O00479 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGN4O00479 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.45■□□□□ 0.38
HMGN4O00479 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.45■□□□□ 0.38
HMGN4O00479 AP000692.2-201ENST00000608391 879 ntBASIC17.45■□□□□ 0.38
HMGN4O00479 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGN4O00479 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGN4O00479 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGN4O00479 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGN4O00479 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGN4O00479 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
HMGN4O00479 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGN4O00479 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.45■□□□□ 0.38
HMGN4O00479 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGN4O00479 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.45■□□□□ 0.38
HMGN4O00479 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.45■□□□□ 0.38
HMGN4O00479 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGN4O00479 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGN4O00479 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGN4O00479 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGN4O00479 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGN4O00479 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGN4O00479 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGN4O00479 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
HMGN4O00479 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGN4O00479 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGN4O00479 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGN4O00479 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGN4O00479 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGN4O00479 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGN4O00479 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGN4O00479 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.44■□□□□ 0.38
HMGN4O00479 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.44■□□□□ 0.38
HMGN4O00479 AC098590.1-201ENST00000468126 897 ntBASIC17.44■□□□□ 0.38
HMGN4O00479 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.44■□□□□ 0.38
HMGN4O00479 AC142381.4-202ENST00000563973 229 ntBASIC17.44■□□□□ 0.38
HMGN4O00479 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGN4O00479 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms