Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CBX4O00257 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC19.16■□□□□ 0.66
CBX4O00257 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CBX4O00257 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CBX4O00257 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
CBX4O00257 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CBX4O00257 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CBX4O00257 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.16■□□□□ 0.66
CBX4O00257 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.16■□□□□ 0.66
CBX4O00257 MIR3180-5-201ENST00000583743 153 ntBASIC19.16■□□□□ 0.66
CBX4O00257 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC19.16■□□□□ 0.66
CBX4O00257 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CBX4O00257 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.16■□□□□ 0.66
CBX4O00257 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC19.16■□□□□ 0.66
CBX4O00257 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.16■□□□□ 0.66
CBX4O00257 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CBX4O00257 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CBX4O00257 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CBX4O00257 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
CBX4O00257 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CBX4O00257 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.16■□□□□ 0.66
CBX4O00257 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
CBX4O00257 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
CBX4O00257 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CBX4O00257 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CBX4O00257 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CBX4O00257 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CBX4O00257 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CBX4O00257 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CBX4O00257 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.15■□□□□ 0.66
CBX4O00257 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CBX4O00257 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CBX4O00257 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CBX4O00257 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CBX4O00257 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CBX4O00257 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CBX4O00257 AL109659.2-201ENST00000606809 1674 ntBASIC19.15■□□□□ 0.66
CBX4O00257 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.15■□□□□ 0.66
CBX4O00257 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
CBX4O00257 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CBX4O00257 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CBX4O00257 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CBX4O00257 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CBX4O00257 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.15■□□□□ 0.66
CBX4O00257 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.15■□□□□ 0.66
CBX4O00257 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CBX4O00257 COX11P1-201ENST00000489116 835 ntBASIC19.15■□□□□ 0.66
CBX4O00257 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.15■□□□□ 0.66
CBX4O00257 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.15■□□□□ 0.66
CBX4O00257 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.15■□□□□ 0.66
CBX4O00257 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.15■□□□□ 0.66
CBX4O00257 AC139887.4-201ENST00000607877 719 ntBASIC19.15■□□□□ 0.66
CBX4O00257 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.15■□□□□ 0.66
CBX4O00257 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CBX4O00257 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CBX4O00257 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CBX4O00257 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.15■□□□□ 0.66
CBX4O00257 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.15■□□□□ 0.66
CBX4O00257 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.15■□□□□ 0.66
CBX4O00257 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.15■□□□□ 0.66
CBX4O00257 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CBX4O00257 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
CBX4O00257 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.66
CBX4O00257 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.14■□□□□ 0.66
CBX4O00257 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.14■□□□□ 0.66
CBX4O00257 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
CBX4O00257 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
CBX4O00257 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
CBX4O00257 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.14■□□□□ 0.65
CBX4O00257 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CBX4O00257 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.14■□□□□ 0.65
CBX4O00257 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.14■□□□□ 0.65
CBX4O00257 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19.14■□□□□ 0.65
CBX4O00257 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CBX4O00257 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CBX4O00257 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.14■□□□□ 0.65
CBX4O00257 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC19.14■□□□□ 0.65
CBX4O00257 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.14■□□□□ 0.65
CBX4O00257 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CBX4O00257 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.14■□□□□ 0.65
CBX4O00257 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.14■□□□□ 0.65
CBX4O00257 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
CBX4O00257 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CBX4O00257 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CBX4O00257 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
CBX4O00257 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.14■□□□□ 0.65
CBX4O00257 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CBX4O00257 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CBX4O00257 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CBX4O00257 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CBX4O00257 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CBX4O00257 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CBX4O00257 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CBX4O00257 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.13■□□□□ 0.65
CBX4O00257 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
CBX4O00257 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CBX4O00257 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CBX4O00257 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CBX4O00257 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CBX4O00257 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms