Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 MKNK2P1-201ENST00000437526 628 ntBASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 RNF34-208ENST00000555076 593 ntTSL 3 BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 METTL23-205ENST00000588302 925 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC85CA6NKD9 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC85CA6NKD9 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC20.74■□□□□ 0.91
CCDC85CA6NKD9 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC85CA6NKD9 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC85CA6NKD9 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC85CA6NKD9 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC85CA6NKD9 RNA5SP421-201ENST00000516864 134 ntBASIC20.74■□□□□ 0.91
CCDC85CA6NKD9 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC85CA6NKD9 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC20.74■□□□□ 0.91
CCDC85CA6NKD9 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC85CA6NKD9 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC85CA6NKD9 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC85CA6NKD9 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC85CA6NKD9 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC85CA6NKD9 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.74■□□□□ 0.91
CCDC85CA6NKD9 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC85CA6NKD9 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC85CA6NKD9 CCS-201ENST00000310190 942 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC85CA6NKD9 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC85CA6NKD9 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC85CA6NKD9 RPL28-205ENST00000558131 444 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC85CA6NKD9 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
CCDC85CA6NKD9 AC107918.4-202ENST00000641623 219 ntBASIC20.73■□□□□ 0.91
CCDC85CA6NKD9 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC85CA6NKD9 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC85CA6NKD9 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC85CA6NKD9 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CCDC85CA6NKD9 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC85CA6NKD9 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC85CA6NKD9 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC85CA6NKD9 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC85CA6NKD9 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC85CA6NKD9 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CCDC85CA6NKD9 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC20.72■□□□□ 0.91
CCDC85CA6NKD9 ELK2BP-201ENST00000415014 1224 ntBASIC20.72■□□□□ 0.91
CCDC85CA6NKD9 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC85CA6NKD9 TERF1P3-201ENST00000505638 1227 ntBASIC20.72■□□□□ 0.91
CCDC85CA6NKD9 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC20.72■□□□□ 0.91
CCDC85CA6NKD9 NOP2-220ENST00000545915 630 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC85CA6NKD9 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CCDC85CA6NKD9 CECR7-204ENST00000609932 568 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC85CA6NKD9 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC20.72■□□□□ 0.91
CCDC85CA6NKD9 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC20.72■□□□□ 0.91
CCDC85CA6NKD9 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC85CA6NKD9 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.72■□□□□ 0.91
CCDC85CA6NKD9 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC85CA6NKD9 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC85CA6NKD9 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
CCDC85CA6NKD9 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
CCDC85CA6NKD9 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC85CA6NKD9 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CCDC85CA6NKD9 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
CCDC85CA6NKD9 KRT8P7-201ENST00000533003 1432 ntBASIC20.71■□□□□ 0.91
CCDC85CA6NKD9 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
CCDC85CA6NKD9 FUOM-202ENST00000368551 628 ntTSL 3 BASIC20.71■□□□□ 0.91
CCDC85CA6NKD9 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC85CA6NKD9 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC20.71■□□□□ 0.91
CCDC85CA6NKD9 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC85CA6NKD9 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC20.71■□□□□ 0.91
CCDC85CA6NKD9 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC20.71■□□□□ 0.91
CCDC85CA6NKD9 MTDHP4-201ENST00000600287 670 ntBASIC20.71■□□□□ 0.91
CCDC85CA6NKD9 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
CCDC85CA6NKD9 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC85CA6NKD9 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CCDC85CA6NKD9 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
CCDC85CA6NKD9 FP700111.2-201ENST00000619190 1892 ntBASIC20.71■□□□□ 0.91
CCDC85CA6NKD9 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
CCDC85CA6NKD9 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC85CA6NKD9 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.7■□□□□ 0.9
CCDC85CA6NKD9 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC85CA6NKD9 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC20.7■□□□□ 0.9
CCDC85CA6NKD9 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC85CA6NKD9 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC85CA6NKD9 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC85CA6NKD9 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC85CA6NKD9 RBSN-204ENST00000449050 903 ntTSL 2 BASIC20.7■□□□□ 0.9
CCDC85CA6NKD9 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC20.7■□□□□ 0.9
CCDC85CA6NKD9 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC20.7■□□□□ 0.9
CCDC85CA6NKD9 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC20.7■□□□□ 0.9
CCDC85CA6NKD9 TCAP-202ENST00000578283 583 ntTSL 5 BASIC20.7■□□□□ 0.9
CCDC85CA6NKD9 TK1-204ENST00000590430 683 ntTSL 3 BASIC20.7■□□□□ 0.9
CCDC85CA6NKD9 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
CCDC85CA6NKD9 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC85CA6NKD9 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC85CA6NKD9 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CCDC85CA6NKD9 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms