Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 COPS8-203ENST00000409334 794 ntTSL 5 BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 ZNF444P1-201ENST00000559497 298 ntBASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
TRAV40A0A0B4J280 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 IRX1P1-201ENST00000438849 1838 ntBASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 ENSA-205ENST00000361532 792 ntTSL 2 BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 NMU-205ENST00000511469 756 ntTSL 3 BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 USF2-205ENST00000594064 1179 ntTSL 2 BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 CLN6-214ENST00000636314 442 ntTSL 3 BASIC15.27■□□□□ 0.04
TRAV40A0A0B4J280 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV40A0A0B4J280 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV40A0A0B4J280 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV40A0A0B4J280 AL512353.2-201ENST00000448759 1962 ntBASIC15.27■□□□□ 0.03
TRAV40A0A0B4J280 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC15.27■□□□□ 0.03
TRAV40A0A0B4J280 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV40A0A0B4J280 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV40A0A0B4J280 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV40A0A0B4J280 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV40A0A0B4J280 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
TRAV40A0A0B4J280 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV40A0A0B4J280 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
TRAV40A0A0B4J280 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC15.27■□□□□ 0.03
TRAV40A0A0B4J280 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC15.27■□□□□ 0.03
TRAV40A0A0B4J280 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 GRAMD4P1-201ENST00000435181 1110 ntBASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 RASA4DP-201ENST00000460726 1199 ntBASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 AC141586.3-201ENST00000562166 1838 ntBASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 FEM1AP3-201ENST00000403722 1741 ntBASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC15.26■□□□□ 0.03
TRAV40A0A0B4J280 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms