RNA–Protein interactions for RNA: ENST00000636845.1

RYR3-223, Transcript of ryanodine receptor 3, human

TSL 5

Gene RYR3, Length 2,973 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RYR3-223	ENST00000636845	AEBP2	Q6ZN18	517 aa	Predicted RBP	11.22	□□□□□ -0.61
RYR3-223	ENST00000636845	CHIC1	Q5VXU3	224 aa		11.16	□□□□□ -0.62
RYR3-223	ENST00000636845	SENP3	Q9H4L4	574 aa	Predicted RBP	10.03	□□□□□ -0.8
RYR3-223	ENST00000636845	PHF23	Q9BUL5	403 aa	Predicted RBP	9.62	□□□□□ -0.87
RYR3-223	ENST00000636845	NISCH	Q9Y2I1	1504 aa		9.53	□□□□□ -0.88
RYR3-223	ENST00000636845	POTED	Q86YR6	584 aa		9.41	□□□□□ -0.9
RYR3-223	ENST00000636845	SLC24A1	O60721	1099 aa		9.3	□□□□□ -0.92
RYR3-223	ENST00000636845	HRC	P23327	699 aa		9.07	□□□□□ -0.96
RYR3-223	ENST00000636845	PELP1	Q8IZL8	1130 aa	Known RBP	9.03	□□□□□ -0.96
RYR3-223	ENST00000636845	PLPPR3	Q6T4P5	718 aa		9.01	□□□□□ -0.97
RYR3-223	ENST00000636845	EHMT2	Q96KQ7	1210 aa		8.99	□□□□□ -0.97
RYR3-223	ENST00000636845	FOXD1	Q16676	465 aa		8.99	□□□□□ -0.97
RYR3-223	ENST00000636845	PPARGC1B	Q86YN6	1023 aa	Known RBP	8.87	□□□□□ -0.99
RYR3-223	ENST00000636845	PCGF6	Q9BYE7	350 aa		8.87	□□□□□ -0.99
RYR3-223	ENST00000636845	MSH5	O43196	834 aa		8.83	□□□□□ -1
RYR3-223	ENST00000636845	SUPT5H	O00267	1087 aa	Known RBP	8.76	□□□□□ -1.01
RYR3-223	ENST00000636845	MYT1	Q01538	1121 aa		8.74	□□□□□ -1.01
RYR3-223	ENST00000636845	SHROOM4	Q9ULL8	1493 aa		8.7	□□□□□ -1.02
RYR3-223	ENST00000636845	SCAF1	Q9H7N4	1312 aa	Known RBP	8.64	□□□□□ -1.03
RYR3-223	ENST00000636845	RTN4	Q9NQC3	1192 aa	Known RBP	8.59	□□□□□ -1.03
RYR3-223	ENST00000636845	MYO15B	Q96JP2	1530 aa		8.59	□□□□□ -1.03
RYR3-223	ENST00000636845	ZEB1	P37275	1124 aa	Predicted RBP	8.54	□□□□□ -1.04
RYR3-223	ENST00000636845	TRIM26	Q12899	539 aa	Predicted RBP	8.53	□□□□□ -1.04
RYR3-223	ENST00000636845	DCAF1	Q9Y4B6	1507 aa		8.49	□□□□□ -1.05
RYR3-223	ENST00000636845	LOC105371045	A0A1W2PR82	267 aa		8.43	□□□□□ -1.06
RYR3-223	ENST00000636845	ACIN1	Q9UKV3	1341 aa	Known RBP	8.42	□□□□□ -1.06
RYR3-223	ENST00000636845	GTF3C3	Q9Y5Q9	886 aa		8.38	□□□□□ -1.07
RYR3-223	ENST00000636845	CENPB	P07199	599 aa	Predicted RBP	8.38	□□□□□ -1.07
RYR3-223	ENST00000636845	NEUROD1	Q13562	356 aa		8.38	□□□□□ -1.07
RYR3-223	ENST00000636845	PIAS4	Q8N2W9	510 aa	Predicted RBP	8.37	□□□□□ -1.07
RYR3-223	ENST00000636845	CCDC180	Q9P1Z9	1646 aa		8.37	□□□□□ -1.07
RYR3-223	ENST00000636845	PRKCSH	P14314	528 aa	Predicted RBP	8.33	□□□□□ -1.08
RYR3-223	ENST00000636845	KCNA4	P22459	653 aa		8.33	□□□□□ -1.08
RYR3-223	ENST00000636845	CSRNP3	Q8WYN3	585 aa		8.28	□□□□□ -1.08
RYR3-223	ENST00000636845	DIEXF	Q68CQ4	756 aa	Known RBP	8.24	□□□□□ -1.09
RYR3-223	ENST00000636845	DAXX	Q9UER7	740 aa	Predicted RBP	8.22	□□□□□ -1.09
RYR3-223	ENST00000636845	PPP6R1	Q9UPN7	881 aa		8.22	□□□□□ -1.09
RYR3-223	ENST00000636845	ADRA2B	P18089	450 aa		8.22	□□□□□ -1.09
RYR3-223	ENST00000636845	TTBK1	Q5TCY1	1321 aa	Predicted RBP	8.21	□□□□□ -1.1
RYR3-223	ENST00000636845	CCER1	Q8TC90	406 aa	Predicted RBP	8.2	□□□□□ -1.1
RYR3-223	ENST00000636845	NCBP3	Q53F19	620 aa	Known RBP	8.19	□□□□□ -1.1
RYR3-223	ENST00000636845	DCAF8L2	P0C7V8	631 aa		8.16	□□□□□ -1.1
RYR3-223	ENST00000636845	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	8.16	□□□□□ -1.1
RYR3-223	ENST00000636845	YTHDC1	Q96MU7	727 aa	Known RBP	8.16	□□□□□ -1.1
RYR3-223	ENST00000636845	FAM9A	Q8IZU1	332 aa	Predicted RBP	8.12	□□□□□ -1.11
RYR3-223	ENST00000636845	ZCCHC6	Q5VYS8	1495 aa	Known RBP	8.12	□□□□□ -1.11
RYR3-223	ENST00000636845	BCL11A	Q9H165	835 aa		8.1	□□□□□ -1.11
RYR3-223	ENST00000636845	TRIM41	Q8WV44	630 aa		8.08	□□□□□ -1.12
RYR3-223	ENST00000636845	AMER1	Q5JTC6	1135 aa	Predicted RBP	8.07	□□□□□ -1.12
RYR3-223	ENST00000636845	DNAJC5B	Q9UF47	199 aa		8.05	□□□□□ -1.12
RYR3-223	ENST00000636845	ANP32E	Q9BTT0	268 aa		8.03	□□□□□ -1.12
RYR3-223	ENST00000636845	TIMELESS	Q9UNS1	1208 aa		8.03	□□□□□ -1.12
RYR3-223	ENST00000636845	ZNF316	A6NFI3	1004 aa	Predicted RBP	8.02	□□□□□ -1.13
RYR3-223	ENST00000636845	MIER1	Q8N108	512 aa		7.98	□□□□□ -1.13
RYR3-223	ENST00000636845	DMRT2	Q9Y5R5	561 aa		7.96	□□□□□ -1.13
RYR3-223	ENST00000636845	CLSPN	Q9HAW4	1339 aa		7.93	□□□□□ -1.14
RYR3-223	ENST00000636845	SUPT16H	Q9Y5B9	1047 aa	Known RBP	7.92	□□□□□ -1.14
RYR3-223	ENST00000636845	TSHZ2	Q9NRE2	1034 aa		7.91	□□□□□ -1.14
RYR3-223	ENST00000636845	TULP1	O00294	542 aa	Predicted RBP	7.88	□□□□□ -1.15
RYR3-223	ENST00000636845	TAOK2	Q9UL54	1235 aa		7.82	□□□□□ -1.16
RYR3-223	ENST00000636845	CNKSR2	Q8WXI2	1034 aa		7.8	□□□□□ -1.16
RYR3-223	ENST00000636845	BCAN	Q96GW7	911 aa		7.8	□□□□□ -1.16
RYR3-223	ENST00000636845	HOXD11	P31277	338 aa	Predicted RBP	7.78	□□□□□ -1.16
RYR3-223	ENST00000636845	HNRNPUL2	Q1KMD3	747 aa	Known RBP	7.77	□□□□□ -1.16
RYR3-223	ENST00000636845	ERICH6	Q7L0X2	663 aa		7.77	□□□□□ -1.17
RYR3-223	ENST00000636845	RSF1	Q96T23	1441 aa	Predicted RBP	7.76	□□□□□ -1.17
RYR3-223	ENST00000636845	TPRN	Q4KMQ1	711 aa		7.76	□□□□□ -1.17
RYR3-223	ENST00000636845	SLC4A1AP	Q9BWU0	796 aa	Known RBP	7.76	□□□□□ -1.17
RYR3-223	ENST00000636845	RNF216	Q9NWF9	866 aa	Predicted RBP	7.75	□□□□□ -1.17
RYR3-223	ENST00000636845	APLP2	Q06481	763 aa		7.74	□□□□□ -1.17
RYR3-223	ENST00000636845	PPP4R3CP	Q6ZMV5	832 aa		7.74	□□□□□ -1.17
RYR3-223	ENST00000636845	RBM19	Q9Y4C8	960 aa	Known RBP	7.74	□□□□□ -1.17
RYR3-223	ENST00000636845	NEFL	P07196	543 aa		7.73	□□□□□ -1.17
RYR3-223	ENST00000636845	FKBP8	Q14318	412 aa		7.73	□□□□□ -1.17
RYR3-223	ENST00000636845	KLHL34	Q8N239	644 aa		7.73	□□□□□ -1.17
RYR3-223	ENST00000636845	ABCC9	O60706	1549 aa		7.73	□□□□□ -1.17
RYR3-223	ENST00000636845	ARX	Q96QS3	562 aa		7.72	□□□□□ -1.17
RYR3-223	ENST00000636845	RB1CC1	Q8TDY2	1594 aa		7.72	□□□□□ -1.17
RYR3-223	ENST00000636845	WRN	Q14191	1432 aa	Predicted RBP eCLIP	7.72	□□□□□ -1.17
RYR3-223	ENST00000636845	ZBTB22	O15209	634 aa		7.7	□□□□□ -1.18
RYR3-223	ENST00000636845	UBTF	P17480	764 aa	Known RBP	7.69	□□□□□ -1.18
RYR3-223	ENST00000636845	CEP162	Q5TB80	1403 aa		7.69	□□□□□ -1.18
RYR3-223	ENST00000636845	ITGAE	P38570	1179 aa		7.65	□□□□□ -1.18
RYR3-223	ENST00000636845	MYT1L	Q9UL68	1186 aa		7.65	□□□□□ -1.18
RYR3-223	ENST00000636845	TNIK	Q9UKE5	1360 aa		7.62	□□□□□ -1.19
RYR3-223	ENST00000636845	CACNB1	Q02641	598 aa	Predicted RBP	7.62	□□□□□ -1.19
RYR3-223	ENST00000636845	KCNH8	Q96L42	1107 aa		7.61	□□□□□ -1.19
RYR3-223	ENST00000636845	DEK	P35659	375 aa	Known RBP	7.61	□□□□□ -1.19
RYR3-223	ENST00000636845	CDK11A	Q9UQ88	783 aa	Predicted RBP	7.59	□□□□□ -1.19
RYR3-223	ENST00000636845	PODXL2	Q9NZ53	605 aa		7.59	□□□□□ -1.19
RYR3-223	ENST00000636845	FANCI	Q9NVI1	1328 aa		7.59	□□□□□ -1.19
RYR3-223	ENST00000636845	ANO8	Q9HCE9	1232 aa	Predicted RBP	7.58	□□□□□ -1.2
RYR3-223	ENST00000636845	PLCB2	Q00722	1185 aa		7.57	□□□□□ -1.2
RYR3-223	ENST00000636845	HAP1	P54257	671 aa	Predicted RBP	7.56	□□□□□ -1.2
RYR3-223	ENST00000636845	TRIM52	Q96A61	297 aa		7.56	□□□□□ -1.2
RYR3-223	ENST00000636845	SCRIB	Q14160	1630 aa		7.54	□□□□□ -1.2
RYR3-223	ENST00000636845	DDX10	Q13206	875 aa	Known RBP	7.53	□□□□□ -1.2
RYR3-223	ENST00000636845	DHX57	Q6P158	1386 aa	Known RBP	7.53	□□□□□ -1.2
RYR3-223	ENST00000636845	HOMEZ	Q8IX15	550 aa		7.53	□□□□□ -1.2
RYR3-223	ENST00000636845	NBR1	Q14596	966 aa		7.53	□□□□□ -1.2

Retrieved 100 of 20,778 RNA–protein pairs in 63 ms