RNA–Protein interactions for RNA: ENST00000611829.4

LINC00635-223, long intergenic non-protein coding RNA 635, human

TSL 5

Gene LINC00635, Length 290 nt, Biotype lincRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LINC00635-223	ENST00000611829	CHIC1	Q5VXU3	224 aa		20.16	■□□□□ 0.82
LINC00635-223	ENST00000611829	AEBP2	Q6ZN18	517 aa	Predicted RBP	20.01	■□□□□ 0.79
LINC00635-223	ENST00000611829	PHF23	Q9BUL5	403 aa	Predicted RBP	17.91	■□□□□ 0.46
LINC00635-223	ENST00000611829	SENP3	Q9H4L4	574 aa	Predicted RBP	16.7	■□□□□ 0.26
LINC00635-223	ENST00000611829	PLPPR3	Q6T4P5	718 aa		16.66	■□□□□ 0.26
LINC00635-223	ENST00000611829	ADRA2B	P18089	450 aa		15.77	■□□□□ 0.12
LINC00635-223	ENST00000611829	PPP6R1	Q9UPN7	881 aa		15.6	■□□□□ 0.09
LINC00635-223	ENST00000611829	FOXD1	Q16676	465 aa		15.53	■□□□□ 0.08
LINC00635-223	ENST00000611829	KCNA4	P22459	653 aa		15.4	■□□□□ 0.06
LINC00635-223	ENST00000611829	EHMT2	Q96KQ7	1210 aa		15.29	■□□□□ 0.04
LINC00635-223	ENST00000611829	PPP4R3CP	Q6ZMV5	832 aa		14.85	□□□□□ -0.03
LINC00635-223	ENST00000611829	PIAS4	Q8N2W9	510 aa	Predicted RBP	14.79	□□□□□ -0.04
LINC00635-223	ENST00000611829	SLC4A1AP	Q9BWU0	796 aa	Known RBP	14.75	□□□□□ -0.05
LINC00635-223	ENST00000611829	CSRNP3	Q8WYN3	585 aa		14.72	□□□□□ -0.05
LINC00635-223	ENST00000611829	NCBP3	Q53F19	620 aa	Known RBP	14.58	□□□□□ -0.08
LINC00635-223	ENST00000611829	NPM3	O75607	178 aa	Known RBP	14.47	□□□□□ -0.09
LINC00635-223	ENST00000611829	NISCH	Q9Y2I1	1504 aa		14.28	□□□□□ -0.12
LINC00635-223	ENST00000611829	ZBTB22	O15209	634 aa		14.22	□□□□□ -0.13
LINC00635-223	ENST00000611829	CNKSR2	Q8WXI2	1034 aa		14.2	□□□□□ -0.14
LINC00635-223	ENST00000611829	SCAF1	Q9H7N4	1312 aa	Known RBP	14.1	□□□□□ -0.15
LINC00635-223	ENST00000611829	MAPK8IP2	Q13387	824 aa	Predicted RBP	14	□□□□□ -0.17
LINC00635-223	ENST00000611829	MSH5	O43196	834 aa		13.88	□□□□□ -0.19
LINC00635-223	ENST00000611829	FOXD4L1	Q9NU39	408 aa		13.86	□□□□□ -0.19
LINC00635-223	ENST00000611829	DNAJC5B	Q9UF47	199 aa		13.75	□□□□□ -0.21
LINC00635-223	ENST00000611829	RNF216	Q9NWF9	866 aa	Predicted RBP	13.73	□□□□□ -0.21
LINC00635-223	ENST00000611829	SLC4A2	P04920	1241 aa		13.51	□□□□□ -0.25
LINC00635-223	ENST00000611829	HOXD11	P31277	338 aa	Predicted RBP	13.48	□□□□□ -0.25
LINC00635-223	ENST00000611829	DMRT2	Q9Y5R5	561 aa		13.48	□□□□□ -0.25
LINC00635-223	ENST00000611829	RTN4	Q9NQC3	1192 aa	Known RBP	13.42	□□□□□ -0.26
LINC00635-223	ENST00000611829	SLC24A1	O60721	1099 aa		13.28	□□□□□ -0.28
LINC00635-223	ENST00000611829	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.28	□□□□□ -0.28
LINC00635-223	ENST00000611829	MYCN	P04198	464 aa	Predicted RBP	13.27	□□□□□ -0.29
LINC00635-223	ENST00000611829	FKBP8	Q14318	412 aa		13.25	□□□□□ -0.29
LINC00635-223	ENST00000611829	ATXN8OS	P0DMR3	200 aa		13.24	□□□□□ -0.29
LINC00635-223	ENST00000611829	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.03	□□□□□ -0.32
LINC00635-223	ENST00000611829	DCAF8L1	A6NGE4	600 aa		12.97	□□□□□ -0.33
LINC00635-223	ENST00000611829	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	12.9	□□□□□ -0.34
LINC00635-223	ENST00000611829		U3KPZ7	1027 aa	Predicted RBP	12.8	□□□□□ -0.36
LINC00635-223	ENST00000611829	SAMD1	Q6SPF0	538 aa	Predicted RBP	12.76	□□□□□ -0.37
LINC00635-223	ENST00000611829	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.73	□□□□□ -0.37
LINC00635-223	ENST00000611829	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.73	□□□□□ -0.37
LINC00635-223	ENST00000611829	ZNF219	Q9P2Y4	722 aa	Predicted RBP	12.63	□□□□□ -0.39
LINC00635-223	ENST00000611829	SPDYE4	A6NLX3	237 aa		12.48	□□□□□ -0.41
LINC00635-223	ENST00000611829	MKRN4P	Q13434	485 aa	Predicted RBP	12.46	□□□□□ -0.41
LINC00635-223	ENST00000611829	FBXO3	Q9UK99	471 aa		12.44	□□□□□ -0.42
LINC00635-223	ENST00000611829	APLP2	Q06481	763 aa		12.38	□□□□□ -0.43
LINC00635-223	ENST00000611829	CCDC180	Q9P1Z9	1646 aa		12.37	□□□□□ -0.43
LINC00635-223	ENST00000611829	VASP	P50552	380 aa	Predicted RBP	12.33	□□□□□ -0.44
LINC00635-223	ENST00000611829	PROM2	Q8N271	834 aa		12.33	□□□□□ -0.44
LINC00635-223	ENST00000611829	TRH	P20396	242 aa	Predicted RBP	12.29	□□□□□ -0.44
LINC00635-223	ENST00000611829	PLCB2	Q00722	1185 aa		12.29	□□□□□ -0.44
LINC00635-223	ENST00000611829	IFNLR1	Q8IU57	520 aa	Predicted RBP	12.28	□□□□□ -0.44
LINC00635-223	ENST00000611829	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.28	□□□□□ -0.44
LINC00635-223	ENST00000611829	FBLN2	P98095	1184 aa		12.27	□□□□□ -0.45
LINC00635-223	ENST00000611829	DCAF8L2	P0C7V8	631 aa		12.24	□□□□□ -0.45
LINC00635-223	ENST00000611829	POLA2	Q14181	598 aa		12.24	□□□□□ -0.45
LINC00635-223	ENST00000611829	HAP1	P54257	671 aa	Predicted RBP	12.19	□□□□□ -0.46
LINC00635-223	ENST00000611829	PKD2	Q13563	968 aa		12.15	□□□□□ -0.46
LINC00635-223	ENST00000611829	CAPN15	O75808	1086 aa		12.14	□□□□□ -0.47
LINC00635-223	ENST00000611829	ABCB7	O75027	752 aa		12.04	□□□□□ -0.48
LINC00635-223	ENST00000611829	POTED	Q86YR6	584 aa		12.04	□□□□□ -0.48
LINC00635-223	ENST00000611829	RNF39	Q9H2S5	420 aa		12.04	□□□□□ -0.48
LINC00635-223	ENST00000611829	KLHL34	Q8N239	644 aa		11.99	□□□□□ -0.49
LINC00635-223	ENST00000611829	PRKCSH	P14314	528 aa	Predicted RBP	11.96	□□□□□ -0.49
LINC00635-223	ENST00000611829	ZCCHC6	Q5VYS8	1495 aa	Known RBP	11.95	□□□□□ -0.5
LINC00635-223	ENST00000611829	SPOCK2	Q92563	424 aa		11.94	□□□□□ -0.5
LINC00635-223	ENST00000611829	NPM1	P06748	294 aa	Known RBP eCLIP	11.93	□□□□□ -0.5
LINC00635-223	ENST00000611829	ECM2	O94769	699 aa	Predicted RBP	11.92	□□□□□ -0.5
LINC00635-223	ENST00000611829	VSIG10	Q8N0Z9	540 aa		11.92	□□□□□ -0.5
LINC00635-223	ENST00000611829	BCAN	Q96GW7	911 aa		11.92	□□□□□ -0.5
LINC00635-223	ENST00000611829	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.92	□□□□□ -0.5
LINC00635-223	ENST00000611829	C1QBP	Q07021	282 aa	Known RBP	11.87	□□□□□ -0.51
LINC00635-223	ENST00000611829	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.87	□□□□□ -0.51
LINC00635-223	ENST00000611829	ZNF692	Q9BU19	519 aa	Predicted RBP	11.87	□□□□□ -0.51
LINC00635-223	ENST00000611829	KDM2A	Q9Y2K7	1162 aa		11.87	□□□□□ -0.51
LINC00635-223	ENST00000611829	BBX	Q8WY36	941 aa	Predicted RBP	11.86	□□□□□ -0.51
LINC00635-223	ENST00000611829	DCAF1	Q9Y4B6	1507 aa		11.86	□□□□□ -0.51
LINC00635-223	ENST00000611829	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.85	□□□□□ -0.51
LINC00635-223	ENST00000611829	CFAP44	Q96MT7	982 aa		11.84	□□□□□ -0.51
LINC00635-223	ENST00000611829	PLCD3	Q8N3E9	789 aa		11.83	□□□□□ -0.52
LINC00635-223	ENST00000611829	TAOK2	Q9UL54	1235 aa		11.83	□□□□□ -0.52
LINC00635-223	ENST00000611829	RGL2	O15211	777 aa		11.82	□□□□□ -0.52
LINC00635-223	ENST00000611829	STAG3	Q9UJ98	1225 aa		11.81	□□□□□ -0.52
LINC00635-223	ENST00000611829	OSCAR	Q8IYS5	282 aa		11.8	□□□□□ -0.52
LINC00635-223	ENST00000611829	MIER1	Q8N108	512 aa		11.78	□□□□□ -0.52
LINC00635-223	ENST00000611829	PABPN1	Q86U42	306 aa	Known RBP eCLIP	11.76	□□□□□ -0.53
LINC00635-223	ENST00000611829	MYO15B	Q96JP2	1530 aa		11.75	□□□□□ -0.53
LINC00635-223	ENST00000611829	DSG3	P32926	999 aa		11.74	□□□□□ -0.53
LINC00635-223	ENST00000611829	SSUH2	Q9Y2M2	353 aa		11.74	□□□□□ -0.53
LINC00635-223	ENST00000611829	SPDYE2B	A6NHP3	402 aa		11.73	□□□□□ -0.53
LINC00635-223	ENST00000611829	SPDYE6	P0CI01	402 aa		11.73	□□□□□ -0.53
LINC00635-223	ENST00000611829	SPDYE2	Q495Y8	402 aa		11.73	□□□□□ -0.53
LINC00635-223	ENST00000611829	TSHZ2	Q9NRE2	1034 aa		11.72	□□□□□ -0.53
LINC00635-223	ENST00000611829	ABCC9	O60706	1549 aa		11.71	□□□□□ -0.53
LINC00635-223	ENST00000611829	TPRN	Q4KMQ1	711 aa		11.7	□□□□□ -0.54
LINC00635-223	ENST00000611829	SPRYD3	Q8NCJ5	442 aa		11.69	□□□□□ -0.54
LINC00635-223	ENST00000611829	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.69	□□□□□ -0.54
LINC00635-223	ENST00000611829	CHGA	P10645	457 aa	Known RBP	11.66	□□□□□ -0.54
LINC00635-223	ENST00000611829	SHROOM4	Q9ULL8	1493 aa		11.63	□□□□□ -0.55
LINC00635-223	ENST00000611829	NACAD	O15069	1562 aa		11.63	□□□□□ -0.55

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