RNA–Protein interactions for RNA: ENST00000574318.1

TOM1L1-217, Transcript of target of myb1 like 1 membrane trafficking protein, humanhuman

TSL 2

Gene TOM1L1, Length 552 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOM1L1-217ENST00000574318 AEBP2Q6ZN18 517 aaPredicted RBP24.63■■□□□ 1.53
TOM1L1-217ENST00000574318 CHIC1Q5VXU3 224 aa24.19■■□□□ 1.46
TOM1L1-217ENST00000574318 PHF23Q9BUL5 403 aaPredicted RBP21.24■□□□□ 0.99
TOM1L1-217ENST00000574318 SENP3Q9H4L4 574 aaPredicted RBP20.95■□□□□ 0.94
TOM1L1-217ENST00000574318 PLPPR3Q6T4P5 718 aa19.69■□□□□ 0.74
TOM1L1-217ENST00000574318 FOXD1Q16676 465 aa19.38■□□□□ 0.69
TOM1L1-217ENST00000574318 PPP6R1Q9UPN7 881 aa18.68■□□□□ 0.58
TOM1L1-217ENST00000574318 ADRA2BP18089 450 aa18.66■□□□□ 0.58
TOM1L1-217ENST00000574318 PIAS4Q8N2W9 510 aaPredicted RBP18.3■□□□□ 0.52
TOM1L1-217ENST00000574318 MSH5O43196 834 aa17.9■□□□□ 0.46
TOM1L1-217ENST00000574318 PPP4R3CPQ6ZMV5 832 aa17.32■□□□□ 0.36
TOM1L1-217ENST00000574318 SCAF1Q9H7N4 1312 aaKnown RBP17.15■□□□□ 0.34
TOM1L1-217ENST00000574318 KCNA4P22459 653 aa16.99■□□□□ 0.31
TOM1L1-217ENST00000574318 NCBP3Q53F19 620 aaKnown RBP16.92■□□□□ 0.3
TOM1L1-217ENST00000574318 MAPK8IP2Q13387 824 aaPredicted RBP16.88■□□□□ 0.29
TOM1L1-217ENST00000574318 CNKSR2Q8WXI2 1034 aa16.85■□□□□ 0.29
TOM1L1-217ENST00000574318 DMRT2Q9Y5R5 561 aa16.74■□□□□ 0.27
TOM1L1-217ENST00000574318 NPM3O75607 178 aaKnown RBP16.65■□□□□ 0.26
TOM1L1-217ENST00000574318 RNF216Q9NWF9 866 aaPredicted RBP16.51■□□□□ 0.23
TOM1L1-217ENST00000574318 HOXD11P31277 338 aaPredicted RBP16.43■□□□□ 0.22
TOM1L1-217ENST00000574318 DNAJC5BQ9UF47 199 aa16.3■□□□□ 0.2
TOM1L1-217ENST00000574318 SLC4A1APQ9BWU0 796 aaKnown RBP16.21■□□□□ 0.19
TOM1L1-217ENST00000574318 POTEDQ86YR6 584 aa16.09■□□□□ 0.17
TOM1L1-217ENST00000574318 DCAF8L1A6NGE4 600 aa15.89■□□□□ 0.13
TOM1L1-217ENST00000574318 EHMT2Q96KQ7 1210 aa15.85■□□□□ 0.13
TOM1L1-217ENST00000574318 SLC4A2P04920 1241 aa15.7■□□□□ 0.1
TOM1L1-217ENST00000574318 FOXD4L1Q9NU39 408 aa15.67■□□□□ 0.1
TOM1L1-217ENST00000574318 ZBTB22O15209 634 aa15.65■□□□□ 0.1
TOM1L1-217ENST00000574318 CSRNP3Q8WYN3 585 aa15.62■□□□□ 0.09
TOM1L1-217ENST00000574318 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.59■□□□□ 0.09
TOM1L1-217ENST00000574318 MYCNP04198 464 aaPredicted RBP15.42■□□□□ 0.06
TOM1L1-217ENST00000574318 U3KPZ7 1027 aaPredicted RBP15.38■□□□□ 0.05
TOM1L1-217ENST00000574318 RNF39Q9H2S5 420 aa15.33■□□□□ 0.04
TOM1L1-217ENST00000574318 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.26■□□□□ 0.03
TOM1L1-217ENST00000574318 HNRNPUL2Q1KMD3 747 aaKnown RBP15.26■□□□□ 0.03
TOM1L1-217ENST00000574318 SAMD1Q6SPF0 538 aaPredicted RBP15.2■□□□□ 0.02
TOM1L1-217ENST00000574318 C1QBPQ07021 282 aaKnown RBP15.17■□□□□ 0.02
TOM1L1-217ENST00000574318 ATXN8OSP0DMR3 200 aa15.16■□□□□ 0.02
TOM1L1-217ENST00000574318 APLP2Q06481 763 aa15.1■□□□□ 0.01
TOM1L1-217ENST00000574318 NISCHQ9Y2I1 1504 aa14.95□□□□□ -0.02
TOM1L1-217ENST00000574318 ATF5Q9Y2D1 282 aaPredicted RBP14.92□□□□□ -0.02
TOM1L1-217ENST00000574318 SPINK5Q9NQ38 1064 aaPredicted RBP14.88□□□□□ -0.03
TOM1L1-217ENST00000574318 ZNF219Q9P2Y4 722 aaPredicted RBP14.85□□□□□ -0.03
TOM1L1-217ENST00000574318 CAPN15O75808 1086 aa14.82□□□□□ -0.04
TOM1L1-217ENST00000574318 CACNB1Q02641 598 aaPredicted RBP14.8□□□□□ -0.04
TOM1L1-217ENST00000574318 TRHP20396 242 aaPredicted RBP14.74□□□□□ -0.05
TOM1L1-217ENST00000574318 DSG3P32926 999 aa14.6□□□□□ -0.07
TOM1L1-217ENST00000574318 POLA2Q14181 598 aa14.55□□□□□ -0.08
TOM1L1-217ENST00000574318 ABCB7O75027 752 aa14.52□□□□□ -0.09
TOM1L1-217ENST00000574318 ZBTB12Q9Y330 459 aaPredicted RBP14.42□□□□□ -0.1
TOM1L1-217ENST00000574318 FBLN2P98095 1184 aa14.35□□□□□ -0.11
TOM1L1-217ENST00000574318 MKRN4PQ13434 485 aaPredicted RBP14.31□□□□□ -0.12
TOM1L1-217ENST00000574318 FKBP8Q14318 412 aa14.1□□□□□ -0.15
TOM1L1-217ENST00000574318 OSCARQ8IYS5 282 aa14.08□□□□□ -0.16
TOM1L1-217ENST00000574318 SPDYE4A6NLX3 237 aa14.03□□□□□ -0.16
TOM1L1-217ENST00000574318 SPDYE2BA6NHP3 402 aa14.02□□□□□ -0.17
TOM1L1-217ENST00000574318 SPDYE6P0CI01 402 aa14.02□□□□□ -0.17
TOM1L1-217ENST00000574318 SPDYE2Q495Y8 402 aa14.02□□□□□ -0.17
TOM1L1-217ENST00000574318 RBM42Q9BTD8 480 aaKnown RBP13.95□□□□□ -0.18
TOM1L1-217ENST00000574318 SSUH2Q9Y2M2 353 aa13.92□□□□□ -0.18
TOM1L1-217ENST00000574318 ZNF692Q9BU19 519 aaPredicted RBP13.91□□□□□ -0.18
TOM1L1-217ENST00000574318 PROM2Q8N271 834 aa13.9□□□□□ -0.18
TOM1L1-217ENST00000574318 AKT1S1Q96B36 256 aa13.78□□□□□ -0.2
TOM1L1-217ENST00000574318 PABPN1Q86U42 306 aaKnown RBP eCLIP13.73□□□□□ -0.21
TOM1L1-217ENST00000574318 FBXO3Q9UK99 471 aa13.64□□□□□ -0.23
TOM1L1-217ENST00000574318 REM2Q8IYK8 340 aaPredicted RBP13.61□□□□□ -0.23
TOM1L1-217ENST00000574318 STAG3Q9UJ98 1225 aa13.58□□□□□ -0.24
TOM1L1-217ENST00000574318 SPDYE1Q8NFV5 336 aaPredicted RBP13.56□□□□□ -0.24
TOM1L1-217ENST00000574318 PITPNM1O00562 1244 aa13.46□□□□□ -0.25
TOM1L1-217ENST00000574318 VASPP50552 380 aaPredicted RBP13.44□□□□□ -0.26
TOM1L1-217ENST00000574318 AMER1Q5JTC6 1135 aaPredicted RBP13.43□□□□□ -0.26
TOM1L1-217ENST00000574318 CLEC11AQ9Y240 323 aa13.41□□□□□ -0.26
TOM1L1-217ENST00000574318 ABCC9O60706 1549 aa13.37□□□□□ -0.27
TOM1L1-217ENST00000574318 PRR29P0C7W0 189 aa13.34□□□□□ -0.27
TOM1L1-217ENST00000574318 CCDC180Q9P1Z9 1646 aa13.31□□□□□ -0.28
TOM1L1-217ENST00000574318 RTN4Q9NQC3 1192 aaKnown RBP13.31□□□□□ -0.28
TOM1L1-217ENST00000574318 CHRDL2Q6WN34 429 aa13.29□□□□□ -0.28
TOM1L1-217ENST00000574318 PLCD3Q8N3E9 789 aa13.27□□□□□ -0.29
TOM1L1-217ENST00000574318 MIER1Q8N108 512 aa13.26□□□□□ -0.29
TOM1L1-217ENST00000574318 PLEKHG5O94827 1062 aa13.24□□□□□ -0.29
TOM1L1-217ENST00000574318 IFNLR1Q8IU57 520 aaPredicted RBP13.23□□□□□ -0.29
TOM1L1-217ENST00000574318 FXR2P51116 673 aaKnown RBP eCLIP13.22□□□□□ -0.29
TOM1L1-217ENST00000574318 CREBZFQ9NS37 354 aa13.21□□□□□ -0.29
TOM1L1-217ENST00000574318 ZBTB47Q9UFB7 747 aaPredicted RBP13.19□□□□□ -0.3
TOM1L1-217ENST00000574318 PIP4P2Q8N4L2 257 aa13.13□□□□□ -0.31
TOM1L1-217ENST00000574318 KLHL34Q8N239 644 aa13.12□□□□□ -0.31
TOM1L1-217ENST00000574318 MNX1P50219 401 aaPredicted RBP13.11□□□□□ -0.31
TOM1L1-217ENST00000574318 PRKAR2AP13861 404 aaKnown RBP13.1□□□□□ -0.31
TOM1L1-217ENST00000574318 CHADLQ6NUI6 762 aa13.08□□□□□ -0.32
TOM1L1-217ENST00000574318 SPOCK2Q92563 424 aa13.07□□□□□ -0.32
TOM1L1-217ENST00000574318 NPM1P06748 294 aaKnown RBP eCLIP13.02□□□□□ -0.33
TOM1L1-217ENST00000574318 FARP1Q9Y4F1 1045 aaPredicted RBP13.02□□□□□ -0.33
TOM1L1-217ENST00000574318 NUBP1P53384 320 aa12.97□□□□□ -0.33
TOM1L1-217ENST00000574318 RASEFQ8IZ41 740 aa12.87□□□□□ -0.35
TOM1L1-217ENST00000574318 FAM212AQ96EL1 285 aa12.87□□□□□ -0.35
TOM1L1-217ENST00000574318 GSE1Q14687 1217 aa12.86□□□□□ -0.35
TOM1L1-217ENST00000574318 PKD2Q13563 968 aa12.83□□□□□ -0.36
TOM1L1-217ENST00000574318 TRIM41Q8WV44 630 aa12.81□□□□□ -0.36
TOM1L1-217ENST00000574318 CIZ1Q9ULV3 898 aaPredicted RBP12.8□□□□□ -0.36
TOM1L1-217ENST00000574318 DCAF8Q5TAQ9 597 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 125.6 ms