RNA–Protein interactions for RNA: ENST00000569773.1

GDE1-204, Transcript of glycerophosphodiester phosphodiesterase 1, humanhuman

TSL 3

Gene GDE1, Length 739 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GDE1-204ENST00000569773 AEBP2Q6ZN18 517 aaPredicted RBP22.85■■□□□ 1.25
GDE1-204ENST00000569773 CHIC1Q5VXU3 224 aa22.28■■□□□ 1.16
GDE1-204ENST00000569773 SENP3Q9H4L4 574 aaPredicted RBP19.77■□□□□ 0.76
GDE1-204ENST00000569773 PHF23Q9BUL5 403 aaPredicted RBP19.64■□□□□ 0.73
GDE1-204ENST00000569773 FOXD1Q16676 465 aa18.26■□□□□ 0.51
GDE1-204ENST00000569773 PLPPR3Q6T4P5 718 aa18.19■□□□□ 0.5
GDE1-204ENST00000569773 MSH5O43196 834 aa17.36■□□□□ 0.37
GDE1-204ENST00000569773 ADRA2BP18089 450 aa17.26■□□□□ 0.35
GDE1-204ENST00000569773 PPP6R1Q9UPN7 881 aa17.26■□□□□ 0.35
GDE1-204ENST00000569773 PIAS4Q8N2W9 510 aaPredicted RBP17.1■□□□□ 0.33
GDE1-204ENST00000569773 POTEDQ86YR6 584 aa16.94■□□□□ 0.3
GDE1-204ENST00000569773 PPP4R3CPQ6ZMV5 832 aa16.07■□□□□ 0.16
GDE1-204ENST00000569773 KCNA4P22459 653 aa15.98■□□□□ 0.15
GDE1-204ENST00000569773 SCAF1Q9H7N4 1312 aaKnown RBP15.75■□□□□ 0.11
GDE1-204ENST00000569773 NCBP3Q53F19 620 aaKnown RBP15.69■□□□□ 0.1
GDE1-204ENST00000569773 DMRT2Q9Y5R5 561 aa15.61■□□□□ 0.09
GDE1-204ENST00000569773 MAPK8IP2Q13387 824 aaPredicted RBP15.6■□□□□ 0.09
GDE1-204ENST00000569773 CNKSR2Q8WXI2 1034 aa15.55■□□□□ 0.08
GDE1-204ENST00000569773 NPM3O75607 178 aaKnown RBP15.49■□□□□ 0.07
GDE1-204ENST00000569773 SLC4A1APQ9BWU0 796 aaKnown RBP15.25■□□□□ 0.03
GDE1-204ENST00000569773 RNF216Q9NWF9 866 aaPredicted RBP15.19■□□□□ 0.02
GDE1-204ENST00000569773 EHMT2Q96KQ7 1210 aa15.12■□□□□ 0.01
GDE1-204ENST00000569773 HOXD11P31277 338 aaPredicted RBP15.06■□□□□ 0
GDE1-204ENST00000569773 DNAJC5BQ9UF47 199 aa14.94□□□□□ -0.02
GDE1-204ENST00000569773 DCAF8L1A6NGE4 600 aa14.91□□□□□ -0.02
GDE1-204ENST00000569773 CACNB1Q02641 598 aaPredicted RBP14.86□□□□□ -0.03
GDE1-204ENST00000569773 CSRNP3Q8WYN3 585 aa14.81□□□□□ -0.04
GDE1-204ENST00000569773 ZBTB22O15209 634 aa14.72□□□□□ -0.05
GDE1-204ENST00000569773 RNF39Q9H2S5 420 aa14.68□□□□□ -0.06
GDE1-204ENST00000569773 FOXD4L1Q9NU39 408 aa14.62□□□□□ -0.07
GDE1-204ENST00000569773 SLC4A2P04920 1241 aa14.58□□□□□ -0.08
GDE1-204ENST00000569773 C1QBPQ07021 282 aaKnown RBP14.57□□□□□ -0.08
GDE1-204ENST00000569773 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.38□□□□□ -0.11
GDE1-204ENST00000569773 MYCNP04198 464 aaPredicted RBP14.29□□□□□ -0.12
GDE1-204ENST00000569773 U3KPZ7 1027 aaPredicted RBP14.18□□□□□ -0.14
GDE1-204ENST00000569773 NISCHQ9Y2I1 1504 aa14.05□□□□□ -0.16
GDE1-204ENST00000569773 ATXN8OSP0DMR3 200 aa14.05□□□□□ -0.16
GDE1-204ENST00000569773 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.03□□□□□ -0.16
GDE1-204ENST00000569773 HNRNPUL2Q1KMD3 747 aaKnown RBP14.03□□□□□ -0.16
GDE1-204ENST00000569773 SAMD1Q6SPF0 538 aaPredicted RBP14□□□□□ -0.17
GDE1-204ENST00000569773 ATF5Q9Y2D1 282 aaPredicted RBP13.93□□□□□ -0.18
GDE1-204ENST00000569773 APLP2Q06481 763 aa13.83□□□□□ -0.2
GDE1-204ENST00000569773 CAPN15O75808 1086 aa13.75□□□□□ -0.21
GDE1-204ENST00000569773 SPINK5Q9NQ38 1064 aaPredicted RBP13.74□□□□□ -0.21
GDE1-204ENST00000569773 DSG3P32926 999 aa13.68□□□□□ -0.22
GDE1-204ENST00000569773 ZNF219Q9P2Y4 722 aaPredicted RBP13.67□□□□□ -0.22
GDE1-204ENST00000569773 TRHP20396 242 aaPredicted RBP13.66□□□□□ -0.22
GDE1-204ENST00000569773 POLA2Q14181 598 aa13.47□□□□□ -0.25
GDE1-204ENST00000569773 ABCB7O75027 752 aa13.44□□□□□ -0.26
GDE1-204ENST00000569773 FKBP8Q14318 412 aa13.39□□□□□ -0.27
GDE1-204ENST00000569773 MKRN4PQ13434 485 aaPredicted RBP13.33□□□□□ -0.28
GDE1-204ENST00000569773 POTEHQ6S545 545 aa13.3□□□□□ -0.28
GDE1-204ENST00000569773 FBLN2P98095 1184 aa13.29□□□□□ -0.28
GDE1-204ENST00000569773 RBM42Q9BTD8 480 aaKnown RBP13.25□□□□□ -0.29
GDE1-204ENST00000569773 ZBTB12Q9Y330 459 aaPredicted RBP13.22□□□□□ -0.29
GDE1-204ENST00000569773 SPDYE4A6NLX3 237 aa13.13□□□□□ -0.31
GDE1-204ENST00000569773 OSCARQ8IYS5 282 aa13.02□□□□□ -0.33
GDE1-204ENST00000569773 PROM2Q8N271 834 aa12.92□□□□□ -0.34
GDE1-204ENST00000569773 ZNF692Q9BU19 519 aaPredicted RBP12.91□□□□□ -0.34
GDE1-204ENST00000569773 SPDYE2BA6NHP3 402 aa12.9□□□□□ -0.34
GDE1-204ENST00000569773 SPDYE6P0CI01 402 aa12.9□□□□□ -0.34
GDE1-204ENST00000569773 SPDYE2Q495Y8 402 aa12.9□□□□□ -0.34
GDE1-204ENST00000569773 CHRDL2Q6WN34 429 aa12.86□□□□□ -0.35
GDE1-204ENST00000569773 AKT1S1Q96B36 256 aa12.85□□□□□ -0.35
GDE1-204ENST00000569773 SSUH2Q9Y2M2 353 aa12.84□□□□□ -0.35
GDE1-204ENST00000569773 FBXO3Q9UK99 471 aa12.8□□□□□ -0.36
GDE1-204ENST00000569773 PABPN1Q86U42 306 aaKnown RBP eCLIP12.76□□□□□ -0.37
GDE1-204ENST00000569773 CCDC180Q9P1Z9 1646 aa12.68□□□□□ -0.38
GDE1-204ENST00000569773 VASPP50552 380 aaPredicted RBP12.64□□□□□ -0.39
GDE1-204ENST00000569773 REM2Q8IYK8 340 aaPredicted RBP12.63□□□□□ -0.39
GDE1-204ENST00000569773 RTN4Q9NQC3 1192 aaKnown RBP12.59□□□□□ -0.39
GDE1-204ENST00000569773 AMER1Q5JTC6 1135 aaPredicted RBP12.57□□□□□ -0.4
GDE1-204ENST00000569773 ABCC9O60706 1549 aa12.57□□□□□ -0.4
GDE1-204ENST00000569773 STAG3Q9UJ98 1225 aa12.56□□□□□ -0.4
GDE1-204ENST00000569773 IFNLR1Q8IU57 520 aaPredicted RBP12.51□□□□□ -0.41
GDE1-204ENST00000569773 PIP4P2Q8N4L2 257 aa12.47□□□□□ -0.41
GDE1-204ENST00000569773 SPDYE1Q8NFV5 336 aaPredicted RBP12.47□□□□□ -0.41
GDE1-204ENST00000569773 PITPNM1O00562 1244 aa12.46□□□□□ -0.41
GDE1-204ENST00000569773 PLCD3Q8N3E9 789 aa12.44□□□□□ -0.42
GDE1-204ENST00000569773 SP7Q8TDD2 431 aaPredicted RBP12.44□□□□□ -0.42
GDE1-204ENST00000569773 CLEC11AQ9Y240 323 aa12.44□□□□□ -0.42
GDE1-204ENST00000569773 FXR2P51116 673 aaKnown RBP eCLIP12.43□□□□□ -0.42
GDE1-204ENST00000569773 MIER1Q8N108 512 aa12.43□□□□□ -0.42
GDE1-204ENST00000569773 KLHL34Q8N239 644 aa12.38□□□□□ -0.43
GDE1-204ENST00000569773 PRR29P0C7W0 189 aa12.34□□□□□ -0.43
GDE1-204ENST00000569773 HAX1O00165 279 aa12.33□□□□□ -0.44
GDE1-204ENST00000569773 PLEKHG5O94827 1062 aa12.32□□□□□ -0.44
GDE1-204ENST00000569773 SPOCK2Q92563 424 aa12.29□□□□□ -0.44
GDE1-204ENST00000569773 ZBTB47Q9UFB7 747 aaPredicted RBP12.25□□□□□ -0.45
GDE1-204ENST00000569773 CREBZFQ9NS37 354 aa12.24□□□□□ -0.45
GDE1-204ENST00000569773 PRKAR2AP13861 404 aaKnown RBP12.17□□□□□ -0.46
GDE1-204ENST00000569773 PKD2Q13563 968 aa12.17□□□□□ -0.46
GDE1-204ENST00000569773 MNX1P50219 401 aaPredicted RBP12.14□□□□□ -0.47
GDE1-204ENST00000569773 CHADLQ6NUI6 762 aa12.13□□□□□ -0.47
GDE1-204ENST00000569773 DNAJC5Q9H3Z4 198 aa12.13□□□□□ -0.47
GDE1-204ENST00000569773 CIZ1Q9ULV3 898 aaPredicted RBP12.09□□□□□ -0.47
GDE1-204ENST00000569773 NUBP1P53384 320 aa12.08□□□□□ -0.48
GDE1-204ENST00000569773 ECM2O94769 699 aaPredicted RBP12.06□□□□□ -0.48
GDE1-204ENST00000569773 C19orf67A6NJJ6 358 aa12.03□□□□□ -0.48
GDE1-204ENST00000569773 NPM1P06748 294 aaKnown RBP eCLIP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms