RNA–Protein interactions for RNA: ENST00000560166.1

CLPX-206, Transcript of caseinolytic mitochondrial matrix peptidase chaperone subunit, humanhuman

TSL 3

Gene CLPX, Length 563 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLPX-206ENST00000560166 AEBP2Q6ZN18 517 aaPredicted RBP26.2■■□□□ 1.78
CLPX-206ENST00000560166 CHIC1Q5VXU3 224 aa24.45■■□□□ 1.5
CLPX-206ENST00000560166 SENP3Q9H4L4 574 aaPredicted RBP22.43■■□□□ 1.18
CLPX-206ENST00000560166 PHF23Q9BUL5 403 aaPredicted RBP22.07■■□□□ 1.12
CLPX-206ENST00000560166 FOXD1Q16676 465 aa20.98■□□□□ 0.95
CLPX-206ENST00000560166 POTEDQ86YR6 584 aa20.35■□□□□ 0.85
CLPX-206ENST00000560166 MSH5O43196 834 aa19.86■□□□□ 0.77
CLPX-206ENST00000560166 PIAS4Q8N2W9 510 aaPredicted RBP19.41■□□□□ 0.7
CLPX-206ENST00000560166 PPP6R1Q9UPN7 881 aa19.19■□□□□ 0.66
CLPX-206ENST00000560166 PLPPR3Q6T4P5 718 aa19.16■□□□□ 0.66
CLPX-206ENST00000560166 ADRA2BP18089 450 aa19.05■□□□□ 0.64
CLPX-206ENST00000560166 DMRT2Q9Y5R5 561 aa17.71■□□□□ 0.43
CLPX-206ENST00000560166 MAPK8IP2Q13387 824 aaPredicted RBP17.69■□□□□ 0.42
CLPX-206ENST00000560166 SCAF1Q9H7N4 1312 aaKnown RBP17.47■□□□□ 0.39
CLPX-206ENST00000560166 CACNB1Q02641 598 aaPredicted RBP17.36■□□□□ 0.37
CLPX-206ENST00000560166 DCAF8L1A6NGE4 600 aa16.91■□□□□ 0.3
CLPX-206ENST00000560166 RNF39Q9H2S5 420 aa16.9■□□□□ 0.3
CLPX-206ENST00000560166 HOXD11P31277 338 aaPredicted RBP16.86■□□□□ 0.29
CLPX-206ENST00000560166 PPP4R3CPQ6ZMV5 832 aa16.71■□□□□ 0.27
CLPX-206ENST00000560166 C1QBPQ07021 282 aaKnown RBP16.63■□□□□ 0.25
CLPX-206ENST00000560166 RNF216Q9NWF9 866 aaPredicted RBP16.56■□□□□ 0.24
CLPX-206ENST00000560166 CNKSR2Q8WXI2 1034 aa16.54■□□□□ 0.24
CLPX-206ENST00000560166 DNAJC5BQ9UF47 199 aa16.44■□□□□ 0.22
CLPX-206ENST00000560166 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.99■□□□□ 0.15
CLPX-206ENST00000560166 NCBP3Q53F19 620 aaKnown RBP15.89■□□□□ 0.13
CLPX-206ENST00000560166 POTEHQ6S545 545 aa15.83■□□□□ 0.12
CLPX-206ENST00000560166 NPM3O75607 178 aaKnown RBP15.67■□□□□ 0.1
CLPX-206ENST00000560166 DSG3P32926 999 aa15.63■□□□□ 0.09
CLPX-206ENST00000560166 U3KPZ7 1027 aaPredicted RBP15.61■□□□□ 0.09
CLPX-206ENST00000560166 SPINK5Q9NQ38 1064 aaPredicted RBP15.55■□□□□ 0.08
CLPX-206ENST00000560166 CAPN15O75808 1086 aa15.52■□□□□ 0.08
CLPX-206ENST00000560166 SLC4A2P04920 1241 aa15.13■□□□□ 0.01
CLPX-206ENST00000560166 TRHP20396 242 aaPredicted RBP15.13■□□□□ 0.01
CLPX-206ENST00000560166 ZNF219Q9P2Y4 722 aaPredicted RBP15.12■□□□□ 0.01
CLPX-206ENST00000560166 APLP2Q06481 763 aa15.11■□□□□ 0.01
CLPX-206ENST00000560166 ABCB7O75027 752 aa15.09■□□□□ 0.01
CLPX-206ENST00000560166 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.98□□□□□ -0.01
CLPX-206ENST00000560166 HNRNPUL2Q1KMD3 747 aaKnown RBP14.98□□□□□ -0.01
CLPX-206ENST00000560166 RBM42Q9BTD8 480 aaKnown RBP14.91□□□□□ -0.02
CLPX-206ENST00000560166 SAMD1Q6SPF0 538 aaPredicted RBP14.86□□□□□ -0.03
CLPX-206ENST00000560166 KCNA4P22459 653 aa14.83□□□□□ -0.04
CLPX-206ENST00000560166 CHRDL2Q6WN34 429 aa14.81□□□□□ -0.04
CLPX-206ENST00000560166 POLA2Q14181 598 aa14.63□□□□□ -0.07
CLPX-206ENST00000560166 SP7Q8TDD2 431 aaPredicted RBP14.57□□□□□ -0.08
CLPX-206ENST00000560166 MYCNP04198 464 aaPredicted RBP14.49□□□□□ -0.09
CLPX-206ENST00000560166 AKT1S1Q96B36 256 aa14.46□□□□□ -0.09
CLPX-206ENST00000560166 PIP4P2Q8N4L2 257 aa14.33□□□□□ -0.12
CLPX-206ENST00000560166 REM2Q8IYK8 340 aaPredicted RBP14.32□□□□□ -0.12
CLPX-206ENST00000560166 ZBTB12Q9Y330 459 aaPredicted RBP14.29□□□□□ -0.12
CLPX-206ENST00000560166 NISCHQ9Y2I1 1504 aa14.24□□□□□ -0.13
CLPX-206ENST00000560166 HAX1O00165 279 aa14.21□□□□□ -0.13
CLPX-206ENST00000560166 ATF5Q9Y2D1 282 aaPredicted RBP14.21□□□□□ -0.13
CLPX-206ENST00000560166 FXR2P51116 673 aaKnown RBP eCLIP14.19□□□□□ -0.14
CLPX-206ENST00000560166 PITPNM1O00562 1244 aa14.15□□□□□ -0.14
CLPX-206ENST00000560166 OSCARQ8IYS5 282 aa14.15□□□□□ -0.14
CLPX-206ENST00000560166 EVX2Q03828 476 aa14.03□□□□□ -0.16
CLPX-206ENST00000560166 FOXD4L1Q9NU39 408 aa14.03□□□□□ -0.16
CLPX-206ENST00000560166 SLC4A1APQ9BWU0 796 aaKnown RBP13.87□□□□□ -0.19
CLPX-206ENST00000560166 SPDYE2BA6NHP3 402 aa13.81□□□□□ -0.2
CLPX-206ENST00000560166 SPDYE6P0CI01 402 aa13.81□□□□□ -0.2
CLPX-206ENST00000560166 SPDYE2Q495Y8 402 aa13.81□□□□□ -0.2
CLPX-206ENST00000560166 PRKAR2AP13861 404 aaKnown RBP13.77□□□□□ -0.21
CLPX-206ENST00000560166 C19orf67A6NJJ6 358 aa13.75□□□□□ -0.21
CLPX-206ENST00000560166 ATXN8OSP0DMR3 200 aa13.7□□□□□ -0.22
CLPX-206ENST00000560166 SPDYE1Q8NFV5 336 aaPredicted RBP13.7□□□□□ -0.22
CLPX-206ENST00000560166 GABBR2O75899 941 aa13.68□□□□□ -0.22
CLPX-206ENST00000560166 FBLN2P98095 1184 aa13.67□□□□□ -0.22
CLPX-206ENST00000560166 LHX8Q68G74 356 aa13.66□□□□□ -0.22
CLPX-206ENST00000560166 CLEC11AQ9Y240 323 aa13.66□□□□□ -0.22
CLPX-206ENST00000560166 ZBTB22O15209 634 aa13.64□□□□□ -0.23
CLPX-206ENST00000560166 SSUH2Q9Y2M2 353 aa13.58□□□□□ -0.24
CLPX-206ENST00000560166 MKRN4PQ13434 485 aaPredicted RBP13.54□□□□□ -0.24
CLPX-206ENST00000560166 ZNF692Q9BU19 519 aaPredicted RBP13.54□□□□□ -0.24
CLPX-206ENST00000560166 CHADLQ6NUI6 762 aa13.47□□□□□ -0.25
CLPX-206ENST00000560166 POTEIP0CG38 1075 aa13.4□□□□□ -0.26
CLPX-206ENST00000560166 PRR29P0C7W0 189 aa13.39□□□□□ -0.27
CLPX-206ENST00000560166 EHMT2Q96KQ7 1210 aa13.36□□□□□ -0.27
CLPX-206ENST00000560166 CLCN6P51797 869 aa13.31□□□□□ -0.28
CLPX-206ENST00000560166 PABPN1Q86U42 306 aaKnown RBP eCLIP13.31□□□□□ -0.28
CLPX-206ENST00000560166 CD44P16070 742 aaKnown RBP13.29□□□□□ -0.28
CLPX-206ENST00000560166 FARP1Q9Y4F1 1045 aaPredicted RBP13.26□□□□□ -0.29
CLPX-206ENST00000560166 PLSCR2Q9NRY7 297 aa13.19□□□□□ -0.3
CLPX-206ENST00000560166 DCBLD2Q96PD2 775 aa13.15□□□□□ -0.3
CLPX-206ENST00000560166 ZNF579Q8NAF0 562 aaKnown RBP13.09□□□□□ -0.31
CLPX-206ENST00000560166 ZRANB1Q9UGI0 708 aa13.02□□□□□ -0.33
CLPX-206ENST00000560166 OTUD5Q96G74 571 aa13.01□□□□□ -0.33
CLPX-206ENST00000560166 GALR2O43603 387 aaPredicted RBP12.96□□□□□ -0.33
CLPX-206ENST00000560166 ABCC9O60706 1549 aa12.94□□□□□ -0.34
CLPX-206ENST00000560166 POTEB2H3BUK9 544 aa12.94□□□□□ -0.34
CLPX-206ENST00000560166 CREBZFQ9NS37 354 aa12.94□□□□□ -0.34
CLPX-206ENST00000560166 CSRNP3Q8WYN3 585 aa12.88□□□□□ -0.35
CLPX-206ENST00000560166 POTEMA6NI47 508 aa12.87□□□□□ -0.35
CLPX-206ENST00000560166 STAG3Q9UJ98 1225 aa12.85□□□□□ -0.35
CLPX-206ENST00000560166 POTEGQ6S5H5 508 aa12.81□□□□□ -0.36
CLPX-206ENST00000560166 PELP1Q8IZL8 1130 aaKnown RBP12.78□□□□□ -0.36
CLPX-206ENST00000560166 PAK3O75914 559 aaPredicted RBP12.77□□□□□ -0.37
CLPX-206ENST00000560166 PHF12Q96QT6 1004 aa12.77□□□□□ -0.37
CLPX-206ENST00000560166 PCDH10Q9P2E7 1040 aa12.76□□□□□ -0.37
CLPX-206ENST00000560166 ASTLQ6HA08 431 aaPredicted RBP12.68□□□□□ -0.38
CLPX-206ENST00000560166 NPM1P06748 294 aaKnown RBP eCLIP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms