RNA–Protein interactions for RNA: ENST00000559598.6

CRNDE-207, Transcript of colorectal neoplasia differentially expressed, humanhuman

TSL 1 (best)

Gene CRNDE, Length 696 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRNDE-207ENST00000559598 AEBP2Q6ZN18 517 aaPredicted RBP27.28■■□□□ 1.96
CRNDE-207ENST00000559598 CHIC1Q5VXU3 224 aa26.12■■□□□ 1.77
CRNDE-207ENST00000559598 SENP3Q9H4L4 574 aaPredicted RBP23.4■■□□□ 1.34
CRNDE-207ENST00000559598 PHF23Q9BUL5 403 aaPredicted RBP23.05■■□□□ 1.28
CRNDE-207ENST00000559598 FOXD1Q16676 465 aa21.7■■□□□ 1.06
CRNDE-207ENST00000559598 PLPPR3Q6T4P5 718 aa20.98■□□□□ 0.95
CRNDE-207ENST00000559598 MSH5O43196 834 aa20.38■□□□□ 0.85
CRNDE-207ENST00000559598 PIAS4Q8N2W9 510 aaPredicted RBP20.35■□□□□ 0.85
CRNDE-207ENST00000559598 PPP6R1Q9UPN7 881 aa20.33■□□□□ 0.85
CRNDE-207ENST00000559598 ADRA2BP18089 450 aa20.29■□□□□ 0.84
CRNDE-207ENST00000559598 POTEDQ86YR6 584 aa19.58■□□□□ 0.72
CRNDE-207ENST00000559598 SCAF1Q9H7N4 1312 aaKnown RBP18.74■□□□□ 0.59
CRNDE-207ENST00000559598 MAPK8IP2Q13387 824 aaPredicted RBP18.57■□□□□ 0.56
CRNDE-207ENST00000559598 DMRT2Q9Y5R5 561 aa18.54■□□□□ 0.56
CRNDE-207ENST00000559598 PPP4R3CPQ6ZMV5 832 aa18.35■□□□□ 0.53
CRNDE-207ENST00000559598 CNKSR2Q8WXI2 1034 aa18.03■□□□□ 0.48
CRNDE-207ENST00000559598 HOXD11P31277 338 aaPredicted RBP17.91■□□□□ 0.46
CRNDE-207ENST00000559598 RNF216Q9NWF9 866 aaPredicted RBP17.83■□□□□ 0.44
CRNDE-207ENST00000559598 NCBP3Q53F19 620 aaKnown RBP17.78■□□□□ 0.44
CRNDE-207ENST00000559598 DCAF8L1A6NGE4 600 aa17.76■□□□□ 0.43
CRNDE-207ENST00000559598 KCNA4P22459 653 aa17.69■□□□□ 0.42
CRNDE-207ENST00000559598 NPM3O75607 178 aaKnown RBP17.42■□□□□ 0.38
CRNDE-207ENST00000559598 CACNB1Q02641 598 aaPredicted RBP17.36■□□□□ 0.37
CRNDE-207ENST00000559598 DNAJC5BQ9UF47 199 aa17.35■□□□□ 0.37
CRNDE-207ENST00000559598 RNF39Q9H2S5 420 aa17.33■□□□□ 0.36
CRNDE-207ENST00000559598 C1QBPQ07021 282 aaKnown RBP17.14■□□□□ 0.33
CRNDE-207ENST00000559598 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.08■□□□□ 0.32
CRNDE-207ENST00000559598 SLC4A1APQ9BWU0 796 aaKnown RBP16.83■□□□□ 0.28
CRNDE-207ENST00000559598 U3KPZ7 1027 aaPredicted RBP16.68■□□□□ 0.26
CRNDE-207ENST00000559598 SLC4A2P04920 1241 aa16.56■□□□□ 0.24
CRNDE-207ENST00000559598 CAPN15O75808 1086 aa16.41■□□□□ 0.22
CRNDE-207ENST00000559598 APLP2Q06481 763 aa16.41■□□□□ 0.22
CRNDE-207ENST00000559598 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.4■□□□□ 0.22
CRNDE-207ENST00000559598 HNRNPUL2Q1KMD3 747 aaKnown RBP16.4■□□□□ 0.22
CRNDE-207ENST00000559598 SPINK5Q9NQ38 1064 aaPredicted RBP16.37■□□□□ 0.21
CRNDE-207ENST00000559598 EHMT2Q96KQ7 1210 aa16.3■□□□□ 0.2
CRNDE-207ENST00000559598 FOXD4L1Q9NU39 408 aa16.29■□□□□ 0.2
CRNDE-207ENST00000559598 ZBTB22O15209 634 aa16.27■□□□□ 0.2
CRNDE-207ENST00000559598 SAMD1Q6SPF0 538 aaPredicted RBP16.27■□□□□ 0.2
CRNDE-207ENST00000559598 DSG3P32926 999 aa16.26■□□□□ 0.19
CRNDE-207ENST00000559598 ZNF219Q9P2Y4 722 aaPredicted RBP16.21■□□□□ 0.19
CRNDE-207ENST00000559598 MYCNP04198 464 aaPredicted RBP16.17■□□□□ 0.18
CRNDE-207ENST00000559598 TRHP20396 242 aaPredicted RBP16.16■□□□□ 0.18
CRNDE-207ENST00000559598 CSRNP3Q8WYN3 585 aa16.14■□□□□ 0.17
CRNDE-207ENST00000559598 ABCB7O75027 752 aa15.98■□□□□ 0.15
CRNDE-207ENST00000559598 POLA2Q14181 598 aa15.75■□□□□ 0.11
CRNDE-207ENST00000559598 ATXN8OSP0DMR3 200 aa15.74■□□□□ 0.11
CRNDE-207ENST00000559598 ATF5Q9Y2D1 282 aaPredicted RBP15.67■□□□□ 0.1
CRNDE-207ENST00000559598 RBM42Q9BTD8 480 aaKnown RBP15.62■□□□□ 0.09
CRNDE-207ENST00000559598 ZBTB12Q9Y330 459 aaPredicted RBP15.56■□□□□ 0.08
CRNDE-207ENST00000559598 POTEHQ6S545 545 aa15.4■□□□□ 0.06
CRNDE-207ENST00000559598 AKT1S1Q96B36 256 aa15.25■□□□□ 0.03
CRNDE-207ENST00000559598 OSCARQ8IYS5 282 aa15.22■□□□□ 0.03
CRNDE-207ENST00000559598 FBLN2P98095 1184 aa15.2■□□□□ 0.02
CRNDE-207ENST00000559598 NISCHQ9Y2I1 1504 aa15.16■□□□□ 0.02
CRNDE-207ENST00000559598 CHRDL2Q6WN34 429 aa15.15■□□□□ 0.02
CRNDE-207ENST00000559598 REM2Q8IYK8 340 aaPredicted RBP15.05■□□□□ -0
CRNDE-207ENST00000559598 SPDYE2BA6NHP3 402 aa15.04■□□□□ -0
CRNDE-207ENST00000559598 SPDYE6P0CI01 402 aa15.04■□□□□ -0
CRNDE-207ENST00000559598 SPDYE2Q495Y8 402 aa15.04■□□□□ -0
CRNDE-207ENST00000559598 MKRN4PQ13434 485 aaPredicted RBP14.98□□□□□ -0.01
CRNDE-207ENST00000559598 PITPNM1O00562 1244 aa14.87□□□□□ -0.03
CRNDE-207ENST00000559598 ZNF692Q9BU19 519 aaPredicted RBP14.85□□□□□ -0.03
CRNDE-207ENST00000559598 SSUH2Q9Y2M2 353 aa14.8□□□□□ -0.04
CRNDE-207ENST00000559598 PIP4P2Q8N4L2 257 aa14.79□□□□□ -0.04
CRNDE-207ENST00000559598 SPDYE1Q8NFV5 336 aaPredicted RBP14.75□□□□□ -0.05
CRNDE-207ENST00000559598 FXR2P51116 673 aaKnown RBP eCLIP14.74□□□□□ -0.05
CRNDE-207ENST00000559598 CLEC11AQ9Y240 323 aa14.67□□□□□ -0.06
CRNDE-207ENST00000559598 SPDYE4A6NLX3 237 aa14.63□□□□□ -0.07
CRNDE-207ENST00000559598 PABPN1Q86U42 306 aaKnown RBP eCLIP14.61□□□□□ -0.07
CRNDE-207ENST00000559598 FKBP8Q14318 412 aa14.59□□□□□ -0.07
CRNDE-207ENST00000559598 HAX1O00165 279 aa14.52□□□□□ -0.09
CRNDE-207ENST00000559598 PRKAR2AP13861 404 aaKnown RBP14.51□□□□□ -0.09
CRNDE-207ENST00000559598 SP7Q8TDD2 431 aaPredicted RBP14.5□□□□□ -0.09
CRNDE-207ENST00000559598 PRR29P0C7W0 189 aa14.48□□□□□ -0.09
CRNDE-207ENST00000559598 PROM2Q8N271 834 aa14.39□□□□□ -0.11
CRNDE-207ENST00000559598 STAG3Q9UJ98 1225 aa14.33□□□□□ -0.12
CRNDE-207ENST00000559598 CHADLQ6NUI6 762 aa14.32□□□□□ -0.12
CRNDE-207ENST00000559598 C19orf67A6NJJ6 358 aa14.26□□□□□ -0.13
CRNDE-207ENST00000559598 EVX2Q03828 476 aa14.23□□□□□ -0.13
CRNDE-207ENST00000559598 FARP1Q9Y4F1 1045 aaPredicted RBP14.18□□□□□ -0.14
CRNDE-207ENST00000559598 FBXO3Q9UK99 471 aa14.1□□□□□ -0.15
CRNDE-207ENST00000559598 CREBZFQ9NS37 354 aa14.08□□□□□ -0.16
CRNDE-207ENST00000559598 CD44P16070 742 aaKnown RBP14.07□□□□□ -0.16
CRNDE-207ENST00000559598 GABBR2O75899 941 aa14.01□□□□□ -0.17
CRNDE-207ENST00000559598 ABCC9O60706 1549 aa14□□□□□ -0.17
CRNDE-207ENST00000559598 CLCN6P51797 869 aa13.99□□□□□ -0.17
CRNDE-207ENST00000559598 NPM1P06748 294 aaKnown RBP eCLIP13.94□□□□□ -0.18
CRNDE-207ENST00000559598 VASPP50552 380 aaPredicted RBP13.9□□□□□ -0.18
CRNDE-207ENST00000559598 PAK3O75914 559 aaPredicted RBP13.89□□□□□ -0.19
CRNDE-207ENST00000559598 ZRANB1Q9UGI0 708 aa13.88□□□□□ -0.19
CRNDE-207ENST00000559598 MIER1Q8N108 512 aa13.87□□□□□ -0.19
CRNDE-207ENST00000559598 ZNF579Q8NAF0 562 aaKnown RBP13.87□□□□□ -0.19
CRNDE-207ENST00000559598 CCDC180Q9P1Z9 1646 aa13.86□□□□□ -0.19
CRNDE-207ENST00000559598 PLCD3Q8N3E9 789 aa13.85□□□□□ -0.19
CRNDE-207ENST00000559598 MNX1P50219 401 aaPredicted RBP13.84□□□□□ -0.19
CRNDE-207ENST00000559598 PLEKHG5O94827 1062 aa13.82□□□□□ -0.2
CRNDE-207ENST00000559598 DCBLD2Q96PD2 775 aa13.72□□□□□ -0.21
CRNDE-207ENST00000559598 IFNLR1Q8IU57 520 aaPredicted RBP13.71□□□□□ -0.21
CRNDE-207ENST00000559598 ZBTB47Q9UFB7 747 aaPredicted RBP13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms