RNA–Protein interactions for RNA: ENST00000558709.1

SCG3-203, Transcript of secretogranin III, humanhuman

TSL 2

Gene SCG3, Length 896 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCG3-203ENST00000558709 AEBP2Q6ZN18 517 aaPredicted RBP30.83■■■□□ 2.53
SCG3-203ENST00000558709 CHIC1Q5VXU3 224 aa29.86■■■□□ 2.37
SCG3-203ENST00000558709 PHF23Q9BUL5 403 aaPredicted RBP26.27■■□□□ 1.8
SCG3-203ENST00000558709 SENP3Q9H4L4 574 aaPredicted RBP26.12■■□□□ 1.77
SCG3-203ENST00000558709 FOXD1Q16676 465 aa24.3■■□□□ 1.48
SCG3-203ENST00000558709 PLPPR3Q6T4P5 718 aa24.09■■□□□ 1.45
SCG3-203ENST00000558709 PPP6R1Q9UPN7 881 aa23.23■■□□□ 1.31
SCG3-203ENST00000558709 ADRA2BP18089 450 aa23.14■■□□□ 1.29
SCG3-203ENST00000558709 PIAS4Q8N2W9 510 aaPredicted RBP22.79■■□□□ 1.24
SCG3-203ENST00000558709 MSH5O43196 834 aa22.46■■□□□ 1.19
SCG3-203ENST00000558709 PPP4R3CPQ6ZMV5 832 aa21.21■□□□□ 0.99
SCG3-203ENST00000558709 SCAF1Q9H7N4 1312 aaKnown RBP21.1■□□□□ 0.97
SCG3-203ENST00000558709 MAPK8IP2Q13387 824 aaPredicted RBP21.07■□□□□ 0.96
SCG3-203ENST00000558709 POTEDQ86YR6 584 aa20.88■□□□□ 0.93
SCG3-203ENST00000558709 DMRT2Q9Y5R5 561 aa20.85■□□□□ 0.93
SCG3-203ENST00000558709 CNKSR2Q8WXI2 1034 aa20.67■□□□□ 0.9
SCG3-203ENST00000558709 NCBP3Q53F19 620 aaKnown RBP20.52■□□□□ 0.88
SCG3-203ENST00000558709 KCNA4P22459 653 aa20.47■□□□□ 0.87
SCG3-203ENST00000558709 HOXD11P31277 338 aaPredicted RBP20.36■□□□□ 0.85
SCG3-203ENST00000558709 RNF216Q9NWF9 866 aaPredicted RBP20.34■□□□□ 0.85
SCG3-203ENST00000558709 NPM3O75607 178 aaKnown RBP20.31■□□□□ 0.84
SCG3-203ENST00000558709 DNAJC5BQ9UF47 199 aa19.9■□□□□ 0.78
SCG3-203ENST00000558709 NISCHQ9Y2I1 1504 aa19.9■□□□□ 0.78
SCG3-203ENST00000558709 DCAF8L1A6NGE4 600 aa19.78■□□□□ 0.76
SCG3-203ENST00000558709 SLC4A1APQ9BWU0 796 aaKnown RBP19.4■□□□□ 0.7
SCG3-203ENST00000558709 SLC4A2P04920 1241 aa19.27■□□□□ 0.68
SCG3-203ENST00000558709 RNF39Q9H2S5 420 aa19.27■□□□□ 0.68
SCG3-203ENST00000558709 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.25■□□□□ 0.67
SCG3-203ENST00000558709 U3KPZ7 1027 aaPredicted RBP19.04■□□□□ 0.64
SCG3-203ENST00000558709 C1QBPQ07021 282 aaKnown RBP18.99■□□□□ 0.63
SCG3-203ENST00000558709 ZBTB22O15209 634 aa18.9■□□□□ 0.62
SCG3-203ENST00000558709 FOXD4L1Q9NU39 408 aa18.9■□□□□ 0.62
SCG3-203ENST00000558709 CACNB1Q02641 598 aaPredicted RBP18.82■□□□□ 0.6
SCG3-203ENST00000558709 MYCNP04198 464 aaPredicted RBP18.74■□□□□ 0.59
SCG3-203ENST00000558709 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.62■□□□□ 0.57
SCG3-203ENST00000558709 HNRNPUL2Q1KMD3 747 aaKnown RBP18.62■□□□□ 0.57
SCG3-203ENST00000558709 SAMD1Q6SPF0 538 aaPredicted RBP18.57■□□□□ 0.56
SCG3-203ENST00000558709 CSRNP3Q8WYN3 585 aa18.56■□□□□ 0.56
SCG3-203ENST00000558709 SPINK5Q9NQ38 1064 aaPredicted RBP18.54■□□□□ 0.56
SCG3-203ENST00000558709 EHMT2Q96KQ7 1210 aa18.53■□□□□ 0.56
SCG3-203ENST00000558709 APLP2Q06481 763 aa18.46■□□□□ 0.55
SCG3-203ENST00000558709 ABCC9O60706 1549 aa18.43■□□□□ 0.54
SCG3-203ENST00000558709 CAPN15O75808 1086 aa18.38■□□□□ 0.53
SCG3-203ENST00000558709 ATF5Q9Y2D1 282 aaPredicted RBP18.31■□□□□ 0.52
SCG3-203ENST00000558709 ZNF219Q9P2Y4 722 aaPredicted RBP18.29■□□□□ 0.52
SCG3-203ENST00000558709 ATXN8OSP0DMR3 200 aa18.28■□□□□ 0.52
SCG3-203ENST00000558709 DSG3P32926 999 aa18.25■□□□□ 0.51
SCG3-203ENST00000558709 TRHP20396 242 aaPredicted RBP18.24■□□□□ 0.51
SCG3-203ENST00000558709 CCDC180Q9P1Z9 1646 aa18.16■□□□□ 0.5
SCG3-203ENST00000558709 ABCB7O75027 752 aa18.05■□□□□ 0.48
SCG3-203ENST00000558709 POLA2Q14181 598 aa17.94■□□□□ 0.46
SCG3-203ENST00000558709 ZBTB12Q9Y330 459 aaPredicted RBP17.63■□□□□ 0.41
SCG3-203ENST00000558709 MKRN4PQ13434 485 aaPredicted RBP17.52■□□□□ 0.4
SCG3-203ENST00000558709 FBLN2P98095 1184 aa17.44■□□□□ 0.38
SCG3-203ENST00000558709 RB1CC1Q8TDY2 1594 aa17.4■□□□□ 0.38
SCG3-203ENST00000558709 OSCARQ8IYS5 282 aa17.37■□□□□ 0.37
SCG3-203ENST00000558709 RBM42Q9BTD8 480 aaKnown RBP17.33■□□□□ 0.36
SCG3-203ENST00000558709 UNC13AQ9UPW8 1703 aa17.24■□□□□ 0.35
SCG3-203ENST00000558709 SPDYE2BA6NHP3 402 aa17.17■□□□□ 0.34
SCG3-203ENST00000558709 SPDYE6P0CI01 402 aa17.17■□□□□ 0.34
SCG3-203ENST00000558709 SPDYE2Q495Y8 402 aa17.17■□□□□ 0.34
SCG3-203ENST00000558709 NACADO15069 1562 aa17.15■□□□□ 0.34
SCG3-203ENST00000558709 AKT1S1Q96B36 256 aa17.1■□□□□ 0.33
SCG3-203ENST00000558709 SSUH2Q9Y2M2 353 aa17.08■□□□□ 0.32
SCG3-203ENST00000558709 PABPN1Q86U42 306 aaKnown RBP eCLIP17.01■□□□□ 0.31
SCG3-203ENST00000558709 ZNF692Q9BU19 519 aaPredicted RBP17.01■□□□□ 0.31
SCG3-203ENST00000558709 BICRAQ9NZM4 1560 aa16.94■□□□□ 0.3
SCG3-203ENST00000558709 REM2Q8IYK8 340 aaPredicted RBP16.94■□□□□ 0.3
SCG3-203ENST00000558709 SPDYE4A6NLX3 237 aa16.92■□□□□ 0.3
SCG3-203ENST00000558709 DCAF8L2P0C7V8 631 aa16.84■□□□□ 0.29
SCG3-203ENST00000558709 PROM2Q8N271 834 aa16.77■□□□□ 0.28
SCG3-203ENST00000558709 PITPNM1O00562 1244 aa16.76■□□□□ 0.27
SCG3-203ENST00000558709 MYO15BQ96JP2 1530 aa16.75■□□□□ 0.27
SCG3-203ENST00000558709 CHRDL2Q6WN34 429 aa16.72■□□□□ 0.27
SCG3-203ENST00000558709 FKBP8Q14318 412 aa16.7■□□□□ 0.26
SCG3-203ENST00000558709 CC2D2AQ9P2K1 1620 aa16.7■□□□□ 0.26
SCG3-203ENST00000558709 SPDYE1Q8NFV5 336 aaPredicted RBP16.68■□□□□ 0.26
SCG3-203ENST00000558709 CECR2Q9BXF3 1484 aa16.62■□□□□ 0.25
SCG3-203ENST00000558709 SHROOM4Q9ULL8 1493 aa16.6■□□□□ 0.25
SCG3-203ENST00000558709 CLEC11AQ9Y240 323 aa16.54■□□□□ 0.24
SCG3-203ENST00000558709 EIF4G1Q04637 1599 aaKnown RBP16.54■□□□□ 0.24
SCG3-203ENST00000558709 FXR2P51116 673 aaKnown RBP eCLIP16.53■□□□□ 0.24
SCG3-203ENST00000558709 SCRIBQ14160 1630 aa16.49■□□□□ 0.23
SCG3-203ENST00000558709 PIP4P2Q8N4L2 257 aa16.48■□□□□ 0.23
SCG3-203ENST00000558709 STAG3Q9UJ98 1225 aa16.47■□□□□ 0.23
SCG3-203ENST00000558709 POTEHQ6S545 545 aa16.45■□□□□ 0.22
SCG3-203ENST00000558709 ZCCHC6Q5VYS8 1495 aaKnown RBP16.42■□□□□ 0.22
SCG3-203ENST00000558709 DCAF1Q9Y4B6 1507 aa16.4■□□□□ 0.22
SCG3-203ENST00000558709 PRR29P0C7W0 189 aa16.4■□□□□ 0.22
SCG3-203ENST00000558709 DNAJC5Q9H3Z4 198 aa16.4■□□□□ 0.22
SCG3-203ENST00000558709 PRKAR2AP13861 404 aaKnown RBP16.28■□□□□ 0.2
SCG3-203ENST00000558709 CREBZFQ9NS37 354 aa16.25■□□□□ 0.19
SCG3-203ENST00000558709 CHADLQ6NUI6 762 aa16.24■□□□□ 0.19
SCG3-203ENST00000558709 FBXO3Q9UK99 471 aa16.16■□□□□ 0.18
SCG3-203ENST00000558709 MNX1P50219 401 aaPredicted RBP16.1■□□□□ 0.17
SCG3-203ENST00000558709 FARP1Q9Y4F1 1045 aaPredicted RBP16.09■□□□□ 0.17
SCG3-203ENST00000558709 CUX2O14529 1486 aa16.04■□□□□ 0.16
SCG3-203ENST00000558709 VASPP50552 380 aaPredicted RBP16■□□□□ 0.15
SCG3-203ENST00000558709 MIER1Q8N108 512 aa16■□□□□ 0.15
SCG3-203ENST00000558709 C19orf67A6NJJ6 358 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms