RNA–Protein interactions for RNA: ENST00000557311.5

ATXN3-247, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 562 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-247ENST00000557311 AEBP2Q6ZN18 517 aaPredicted RBP20.66■□□□□ 0.9
ATXN3-247ENST00000557311 CHIC1Q5VXU3 224 aa19.44■□□□□ 0.7
ATXN3-247ENST00000557311 SENP3Q9H4L4 574 aaPredicted RBP17.49■□□□□ 0.39
ATXN3-247ENST00000557311 PHF23Q9BUL5 403 aaPredicted RBP17.32■□□□□ 0.36
ATXN3-247ENST00000557311 FOXD1Q16676 465 aa16.4■□□□□ 0.22
ATXN3-247ENST00000557311 PLPPR3Q6T4P5 718 aa15.44■□□□□ 0.06
ATXN3-247ENST00000557311 PPP6R1Q9UPN7 881 aa15.34■□□□□ 0.05
ATXN3-247ENST00000557311 MSH5O43196 834 aa15.26■□□□□ 0.03
ATXN3-247ENST00000557311 ADRA2BP18089 450 aa15.25■□□□□ 0.03
ATXN3-247ENST00000557311 PIAS4Q8N2W9 510 aaPredicted RBP15.25■□□□□ 0.03
ATXN3-247ENST00000557311 POTEDQ86YR6 584 aa15.15■□□□□ 0.02
ATXN3-247ENST00000557311 MAPK8IP2Q13387 824 aaPredicted RBP14.07□□□□□ -0.16
ATXN3-247ENST00000557311 DMRT2Q9Y5R5 561 aa13.89□□□□□ -0.19
ATXN3-247ENST00000557311 SCAF1Q9H7N4 1312 aaKnown RBP13.78□□□□□ -0.2
ATXN3-247ENST00000557311 PPP4R3CPQ6ZMV5 832 aa13.58□□□□□ -0.24
ATXN3-247ENST00000557311 HOXD11P31277 338 aaPredicted RBP13.35□□□□□ -0.27
ATXN3-247ENST00000557311 DCAF8L1A6NGE4 600 aa13.31□□□□□ -0.28
ATXN3-247ENST00000557311 CNKSR2Q8WXI2 1034 aa13.3□□□□□ -0.28
ATXN3-247ENST00000557311 CACNB1Q02641 598 aaPredicted RBP13.2□□□□□ -0.3
ATXN3-247ENST00000557311 RNF216Q9NWF9 866 aaPredicted RBP13.2□□□□□ -0.3
ATXN3-247ENST00000557311 RNF39Q9H2S5 420 aa13.09□□□□□ -0.31
ATXN3-247ENST00000557311 NCBP3Q53F19 620 aaKnown RBP12.93□□□□□ -0.34
ATXN3-247ENST00000557311 NPM3O75607 178 aaKnown RBP12.86□□□□□ -0.35
ATXN3-247ENST00000557311 C1QBPQ07021 282 aaKnown RBP12.84□□□□□ -0.35
ATXN3-247ENST00000557311 DNAJC5BQ9UF47 199 aa12.84□□□□□ -0.35
ATXN3-247ENST00000557311 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.69□□□□□ -0.38
ATXN3-247ENST00000557311 KCNA4P22459 653 aa12.66□□□□□ -0.38
ATXN3-247ENST00000557311 U3KPZ7 1027 aaPredicted RBP12.47□□□□□ -0.41
ATXN3-247ENST00000557311 SPINK5Q9NQ38 1064 aaPredicted RBP12.35□□□□□ -0.43
ATXN3-247ENST00000557311 SLC4A2P04920 1241 aa12.34□□□□□ -0.43
ATXN3-247ENST00000557311 CAPN15O75808 1086 aa12.25□□□□□ -0.45
ATXN3-247ENST00000557311 DSG3P32926 999 aa12.25□□□□□ -0.45
ATXN3-247ENST00000557311 NISCHQ9Y2I1 1504 aa12.16□□□□□ -0.46
ATXN3-247ENST00000557311 SLC4A1APQ9BWU0 796 aaKnown RBP12.1□□□□□ -0.47
ATXN3-247ENST00000557311 TRHP20396 242 aaPredicted RBP12.06□□□□□ -0.48
ATXN3-247ENST00000557311 ABCB7O75027 752 aa12.01□□□□□ -0.49
ATXN3-247ENST00000557311 ZNF219Q9P2Y4 722 aaPredicted RBP11.95□□□□□ -0.5
ATXN3-247ENST00000557311 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.94□□□□□ -0.5
ATXN3-247ENST00000557311 HNRNPUL2Q1KMD3 747 aaKnown RBP11.94□□□□□ -0.5
ATXN3-247ENST00000557311 APLP2Q06481 763 aa11.93□□□□□ -0.5
ATXN3-247ENST00000557311 SAMD1Q6SPF0 538 aaPredicted RBP11.91□□□□□ -0.5
ATXN3-247ENST00000557311 POTEHQ6S545 545 aa11.83□□□□□ -0.52
ATXN3-247ENST00000557311 MYCNP04198 464 aaPredicted RBP11.82□□□□□ -0.52
ATXN3-247ENST00000557311 POLA2Q14181 598 aa11.72□□□□□ -0.53
ATXN3-247ENST00000557311 EHMT2Q96KQ7 1210 aa11.72□□□□□ -0.53
ATXN3-247ENST00000557311 ATF5Q9Y2D1 282 aaPredicted RBP11.7□□□□□ -0.54
ATXN3-247ENST00000557311 FOXD4L1Q9NU39 408 aa11.69□□□□□ -0.54
ATXN3-247ENST00000557311 ZBTB22O15209 634 aa11.6□□□□□ -0.55
ATXN3-247ENST00000557311 RBM42Q9BTD8 480 aaKnown RBP11.56□□□□□ -0.56
ATXN3-247ENST00000557311 CSRNP3Q8WYN3 585 aa11.46□□□□□ -0.57
ATXN3-247ENST00000557311 CHRDL2Q6WN34 429 aa11.43□□□□□ -0.58
ATXN3-247ENST00000557311 ZBTB12Q9Y330 459 aaPredicted RBP11.36□□□□□ -0.59
ATXN3-247ENST00000557311 OSCARQ8IYS5 282 aa11.35□□□□□ -0.59
ATXN3-247ENST00000557311 AKT1S1Q96B36 256 aa11.34□□□□□ -0.59
ATXN3-247ENST00000557311 ATXN8OSP0DMR3 200 aa11.29□□□□□ -0.6
ATXN3-247ENST00000557311 ABCC9O60706 1549 aa11.29□□□□□ -0.6
ATXN3-247ENST00000557311 REM2Q8IYK8 340 aaPredicted RBP11.28□□□□□ -0.6
ATXN3-247ENST00000557311 PIP4P2Q8N4L2 257 aa11.18□□□□□ -0.62
ATXN3-247ENST00000557311 PITPNM1O00562 1244 aa11.16□□□□□ -0.62
ATXN3-247ENST00000557311 MKRN4PQ13434 485 aaPredicted RBP11.13□□□□□ -0.63
ATXN3-247ENST00000557311 FXR2P51116 673 aaKnown RBP eCLIP11.08□□□□□ -0.64
ATXN3-247ENST00000557311 FBLN2P98095 1184 aa11.07□□□□□ -0.64
ATXN3-247ENST00000557311 SPDYE2BA6NHP3 402 aa11.06□□□□□ -0.64
ATXN3-247ENST00000557311 SPDYE6P0CI01 402 aa11.06□□□□□ -0.64
ATXN3-247ENST00000557311 SPDYE2Q495Y8 402 aa11.06□□□□□ -0.64
ATXN3-247ENST00000557311 SP7Q8TDD2 431 aaPredicted RBP11.03□□□□□ -0.64
ATXN3-247ENST00000557311 HAX1O00165 279 aa10.95□□□□□ -0.66
ATXN3-247ENST00000557311 SSUH2Q9Y2M2 353 aa10.95□□□□□ -0.66
ATXN3-247ENST00000557311 EVX2Q03828 476 aa10.94□□□□□ -0.66
ATXN3-247ENST00000557311 ZNF692Q9BU19 519 aaPredicted RBP10.94□□□□□ -0.66
ATXN3-247ENST00000557311 CLEC11AQ9Y240 323 aa10.91□□□□□ -0.66
ATXN3-247ENST00000557311 CCDC180Q9P1Z9 1646 aa10.9□□□□□ -0.66
ATXN3-247ENST00000557311 SPDYE1Q8NFV5 336 aaPredicted RBP10.88□□□□□ -0.67
ATXN3-247ENST00000557311 PRKAR2AP13861 404 aaKnown RBP10.86□□□□□ -0.67
ATXN3-247ENST00000557311 PABPN1Q86U42 306 aaKnown RBP eCLIP10.8□□□□□ -0.68
ATXN3-247ENST00000557311 CHADLQ6NUI6 762 aa10.76□□□□□ -0.69
ATXN3-247ENST00000557311 C19orf67A6NJJ6 358 aa10.73□□□□□ -0.69
ATXN3-247ENST00000557311 PRR29P0C7W0 189 aa10.7□□□□□ -0.7
ATXN3-247ENST00000557311 GABBR2O75899 941 aa10.6□□□□□ -0.71
ATXN3-247ENST00000557311 RB1CC1Q8TDY2 1594 aa10.59□□□□□ -0.71
ATXN3-247ENST00000557311 FARP1Q9Y4F1 1045 aaPredicted RBP10.55□□□□□ -0.72
ATXN3-247ENST00000557311 SPDYE4A6NLX3 237 aa10.54□□□□□ -0.72
ATXN3-247ENST00000557311 DCAF8L2P0C7V8 631 aa10.53□□□□□ -0.72
ATXN3-247ENST00000557311 CD44P16070 742 aaKnown RBP10.49□□□□□ -0.73
ATXN3-247ENST00000557311 FKBP8Q14318 412 aa10.49□□□□□ -0.73
ATXN3-247ENST00000557311 CREBZFQ9NS37 354 aa10.48□□□□□ -0.73
ATXN3-247ENST00000557311 NACADO15069 1562 aa10.48□□□□□ -0.73
ATXN3-247ENST00000557311 POTEIP0CG38 1075 aa10.44□□□□□ -0.74
ATXN3-247ENST00000557311 STAG3Q9UJ98 1225 aa10.39□□□□□ -0.75
ATXN3-247ENST00000557311 LHX8Q68G74 356 aa10.36□□□□□ -0.75
ATXN3-247ENST00000557311 ZRANB1Q9UGI0 708 aa10.34□□□□□ -0.75
ATXN3-247ENST00000557311 ZNF579Q8NAF0 562 aaKnown RBP10.32□□□□□ -0.76
ATXN3-247ENST00000557311 MNX1P50219 401 aaPredicted RBP10.3□□□□□ -0.76
ATXN3-247ENST00000557311 MYO15BQ96JP2 1530 aa10.27□□□□□ -0.77
ATXN3-247ENST00000557311 GALR2O43603 387 aaPredicted RBP10.26□□□□□ -0.77
ATXN3-247ENST00000557311 CLCN6P51797 869 aa10.26□□□□□ -0.77
ATXN3-247ENST00000557311 BICRAQ9NZM4 1560 aa10.26□□□□□ -0.77
ATXN3-247ENST00000557311 PROM2Q8N271 834 aa10.25□□□□□ -0.77
ATXN3-247ENST00000557311 DNAJC5Q9H3Z4 198 aa10.25□□□□□ -0.77
ATXN3-247ENST00000557311 DCBLD2Q96PD2 775 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 97.4 ms